BS27977.complete Sequence
1271 bp assembled on 2013-09-16
GenBank Submission: KX801376
> BS27977.complete
GAAGTTATCAGTCGACATGCCCACAACCACGTCCACATCCACACCCACAC
CCGCACCCACACCAATATCCCTGCCCGCGACCCGTTCCCGGGCACAGGAT
AGGGTTTCTTTCGCCCAGGCGGGTCGGGTGGCTAGGAGCTTTATGTACTG
GCGGCACATGCGTTTCCAGCAGCGCACGCAACAGGAGCAGGAGGTGCGTA
GGCGGGAGCTGATGAGCACGAAGTCAAGTGCCGAGAACCTGGCCACTGGA
GCACCCAGTGCCGCCACCACCAGGTTGATCGGGAATGGGAAAGTGCGCCA
GATGTTCGACGAGCGCCGCCGCGGGGCGGGCATTGATCGCAGCAATCCCC
TCAAGCCGATCGGCACTCTGCCCTCGCCACCCGCCCAAACAAAATCTCGC
CCGCAGCCCCCAATGCAGCGTCTCGTCAAGGGCGTGGCCGACTTGACCAT
GCGGGATGCACCAAATGCACCAGGCAGGAGGATCACTAGTGACAGCAATA
ACAATAAGTTCGCCACGCCCCGCGGGACTTTGAATCGCAACCTTAAGCCC
GTGGTCACCCGCAAGACACCGCCGGCCCAGGAGACCACGCTCCACCAACG
TTCTCCCGCGCCACAACGCAGTCCCAAGATTCAGGCGACCCAACGAGTAA
GTGGAGGAACCGGTGCTGCCCCGACAGCCGGTCGTCTTTCGCCACCATTT
GTTCGACGGGCGGAACCCAAATCACCAGTTAAAAAGGTCAACATGGACAC
AACGACTGCAATCCCAGAGGGCACCGCTTTATGCCGCTACTGCGGACGCC
ACTTCAACACGGATCGTCTGGCGAAGCACGAGGAGGTGTGCCAGCGCATG
CTGACCACCAAACGCAAGATATTCGATGCCTCCAAGCAGCGGATCGAGGG
CACCGAGGCCGCGGCGTTCAATATGAAGTCGAAGGGCAATCGCAACCGTT
CAACTTACAGTAGTGCTGCCCAGCAGAAGGGTCTGACCACTGGAGTGAAG
AAGAACAACTGGCGTAAGAAGCACGAGGACTTCATTCAGTCGATTAGAGC
GGCCAAGCAGGTGAAGGCGCACTTGGCGCGCGGCGGCAAGTTGAGCGACC
TGCCACCACCGCCACCTTCGGAGAATCCAGACTATGTCCAGTGTCCCCAC
TGTGGTCGCCGATTCAACGAACAGGCTGCGGAGCGTCATATCCCCAAGTG
CGTTAACATGGTGCACAACAAGCCCCGTAACGGTCCGCCGGCCAAGAGGC
GTTGAAAGCTTTCTAGACCAT
BS27977.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42675-RE | 1239 | CG42675-PE | 1..1239 | 17..1255 | 6195 | 100 | Plus |
| CG42675-RG | 1284 | CG42675-PG | 186..1284 | 157..1255 | 5495 | 100 | Plus |
| CG42675-RF | 1152 | CG42675-PF | 51..1152 | 154..1255 | 5495 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42675-RE | 1474 | CG42675-RE | 173..1412 | 16..1255 | 6200 | 100 | Plus |
| CG42675-RG | 1448 | CG42675-RG | 288..1386 | 157..1255 | 5495 | 100 | Plus |
| CG42675-RF | 1834 | CG42675-RF | 671..1772 | 154..1255 | 5495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5817516..5818068 | 158..710 | 2765 | 100 | Plus |
| 3R | 32079331 | 3R | 5818248..5818758 | 745..1255 | 2555 | 100 | Plus |
| 3R | 32079331 | 3R | 5816758..5816899 | 16..157 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 5818151..5818188 | 709..746 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:03:51 has no hits.
BS27977.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:11 Download gff for
BS27977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RE | 174..1411 | 17..1254 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:27 Download gff for
BS27977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RE | 174..1411 | 17..1254 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:27 Download gff for
BS27977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5816759..5816899 | 17..157 | 100 | -> | Plus |
| 3R | 5817516..5818067 | 158..709 | 100 | -> | Plus |
| 3R | 5818152..5818187 | 710..745 | 100 | -> | Plus |
| 3R | 5818249..5818757 | 746..1254 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:11 Download gff for
BS27977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1642481..1642621 | 17..157 | 100 | -> | Plus |
| arm_3R | 1643238..1643789 | 158..709 | 100 | -> | Plus |
| arm_3R | 1643874..1643909 | 710..745 | 100 | -> | Plus |
| arm_3R | 1643971..1644479 | 746..1254 | 100 | | Plus |
BS27977.pep Sequence
Translation from 16 to 1254
> BS27977.pep
MPTTTSTSTPTPAPTPISLPATRSRAQDRVSFAQAGRVARSFMYWRHMRF
QQRTQQEQEVRRRELMSTKSSAENLATGAPSAATTRLIGNGKVRQMFDER
RRGAGIDRSNPLKPIGTLPSPPAQTKSRPQPPMQRLVKGVADLTMRDAPN
APGRRITSDSNNNKFATPRGTLNRNLKPVVTRKTPPAQETTLHQRSPAPQ
RSPKIQATQRVSGGTGAAPTAGRLSPPFVRRAEPKSPVKKVNMDTTTAIP
EGTALCRYCGRHFNTDRLAKHEEVCQRMLTTKRKIFDASKQRIEGTEAAA
FNMKSKGNRNRSTYSSAAQQKGLTTGVKKNNWRKKHEDFIQSIRAAKQVK
AHLARGGKLSDLPPPPPSENPDYVQCPHCGRRFNEQAAERHIPKCVNMVH
NKPRNGPPAKRR*
BS27977.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42675-PE | 412 | CG42675-PE | 1..412 | 1..412 | 2164 | 100 | Plus |
| CG42675-PF | 383 | CG42675-PF | 6..383 | 35..412 | 1920 | 97.1 | Plus |
| CG42675-PC | 383 | CG10999-PB | 6..383 | 35..412 | 1920 | 97.1 | Plus |
| CG42675-PB | 383 | CG10999-PA | 6..383 | 35..412 | 1920 | 97.1 | Plus |
| CG42675-PG | 427 | CG42675-PG | 63..427 | 48..412 | 1918 | 100 | Plus |
