BS27978.complete Sequence
2123 bp assembled on 2013-09-16
GenBank Submission: KX806120
> BS27978.complete
GAAGTTATCAGTCGACATGGAGCTGCCAATAGTCCTTCTCTTGGTACTGA
GTGTCATTCCATTTGAAGCCCAGGGAGCTGTGCACGATGAGCTGCCCCAG
TGCGGCTTACATGGTGTTTACAGGCAGCGACAGAGTCTCGTCGAATCGCC
CAACTATCCGGACAACTATCCGGTGAACACCTGCTGGGATTATGTGGTGC
GATCTCCCTACCGCTGCCCCACCAAGTTTCACATACAGTTCTTGGACTTC
AAGCTGGAGCTATCGGAGAACTGCAGTCGGGATTACTTGGCCATTGGCCT
GAACAACGATGGCGACGACATGGAGGTCTTGTGCGGTCAGGTGCTGGGTA
TCAAAAAGTATCACACCCCCGATGGAGTCCTGCGTCTGCGCTTCCTTAGC
GATGATTCGCCTTGGACAACCAACGGTGGCTTCCGTTTGCTCATCACGCG
TTTGGCCTGCGAAAGGGAGGACTTGGTGGCCAGGGGTCTGGACGATGACG
AGGAGGACGTAGATGGCGACACGGTGCAGGTGAGCGCCAAGTCGCCTCCG
AAGAAGCTGCTCACCCAGCATCACCATCATCACCTGCCACAGCAAAGCCA
TCAGCCGCAACTGGAGCCAGCTTTCAACTATACGCAACCAAATCGGTTGG
GGTTTAATTTGGGCTTACAACCAGGTCTTGGTTATCCCGGTGGATTATAC
CCACCGCCTGCGGGATTACCACCCCAGTACACACCGCCATGTGCTCCCCA
GCAGCAGCAACTGTTGCAGCAGCAGCAGGAGCAGCACCGATTCCTGCAGC
AACAGCAATTACAACTGCAGATCCTGCAGCAACAGCGACTGCAACAGCAG
GTCCTGCAGCAGCAGCAGCTGCAACAACAAGTACAAGTTCAACATCCACA
GCAACTTCAACTTTCCCAGCAGCAGCAGCAACTGCAGCAAGAGTTGCCCC
TGATTTCCGATCAATATCAGACCACATCCTTTCAGCCACATGCTGTTACT
CTCAAGGATTACGATGCCCAGACCTTGCAGCAGTTTGGTGGTCAGTTGGA
TCTCTGCTGTGCCAGCAGCTTCAATCAGAATCACTTCTATCTCTCCAGTC
CCGGATTTCCAAGGACAGTCTTGAACTATCTGCTACCCAATCAGCAGAGG
GATTGCGTATTTTACATCGAGAAGAGCTCACCAAATGTCTGTCGACTGCG
GATTCAGTTCAAGTTCTTTGATTTCGGTCAGAATTCAGGAGGTTCAATTG
GAGGCAGCTTTGGTGACGGATTCGGTGGTGGAGTGTCCGGTGGATTGGGC
GGCGGACATAGTGGCGGTTTTGGAGGCCAACATAATTGCAATGGTGACTT
TCTGGAGCTGGATGGTCAGCGCTATTGCGGCTGTCGTTCCGGCTATGTCC
ACAAATCGCATTGGGATCAGGGTCGCAAGGCGCTGCGCATGCGCATTGGA
CAATCGAGCAGCACCACGTCCAATGGCTTTCTGCTGGAGATATTCCAGGA
TCAGGACTCCGATGGCTGTCGTCAAGATGCTGGCCAAGGATTTGGTTTGG
GCTTGCAACCGCAGCAACCTCAAAGGGGATTGGGTTTGTGGCCACAGGGG
TTACAGCCTCAGTTGGGCTTGCAACCTCAGTTGGGCTTGCAACCTCAGTT
GGGATTACCCCCGCAAACCGCACAAATGTGGCCGCTACAACCTGGTTATC
CTGGCTATATCAGTGGATATCCCCTACCCTTTTCGGCCACTCCCTACCGA
ACGGCGAGAAGGATATCCTATGCCCGGGGCATCGATGCTCAACAGCCATC
GAGAGTGGTGGAAACTAACTCCACTCGCAAGGAGTTCTATTACTTCGACG
GCGACGAGGCCTTTGCCCGTTCTGCTGTGGACGATGAGGATGAGGATAAG
GCTCACCTGGGCGTCACAACTCAGCCACAGTCTTCGTCCCAATCCATAGT
TAAGCCAGAGTCACCTCTGGTTACGAAGGCCTTTGAGCAAAGCAGTTGCT
CCTTTGATTACATGGAGGTACTTAAACTTTCAGTCGACACTCTCTGGTTA
ACTAAACCCTTGTGCTTTTCGCCGCTAAGAAGTTGGTTCCCAAACATTTT
TGGCTGAAAGCTTTCTAGACCAT
BS27978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7179-RB | 2091 | CG7179-PB | 1..2091 | 17..2107 | 10455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7179-RB | 2226 | CG7179-RB | 41..2136 | 13..2108 | 10480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:04:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7775894..7777989 | 2108..13 | 10480 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 14:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6928 | 749..943 | 417 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2521 | 749..939 | 399 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2476 | 767..939 | 356 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6867 | 752..939 | 292 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2431 | 780..942 | 291 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6857 | 751..947 | 274 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6836 | 831..947 | 261 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6816 | 803..939 | 253 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2453..2655 | 745..947 | 243 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2861 | 839..937 | 227 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2905 | 784..942 | 184 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6652..6803 | 804..947 | 183 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2378 | 871..943 | 176 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1161 | 839..939 | 173 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1523..1588 | 883..948 | 168 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6782 | 845..947 | 155 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2372 | 890..943 | 135 | 72.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3240..3316 | 863..942 | 123 | 63.7 | Plus |
BS27978.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:30 Download gff for
BS27978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7179-RB | 45..2134 | 17..2106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:47 Download gff for
BS27978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7179-RB | 45..2134 | 17..2106 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:47 Download gff for
BS27978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7775896..7777985 | 17..2106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:30 Download gff for
BS27978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7775896..7777985 | 17..2106 | 100 | | Minus |
BS27978.pep Sequence
Translation from 16 to 2106
> BS27978.pep
MELPIVLLLVLSVIPFEAQGAVHDELPQCGLHGVYRQRQSLVESPNYPDN
YPVNTCWDYVVRSPYRCPTKFHIQFLDFKLELSENCSRDYLAIGLNNDGD
DMEVLCGQVLGIKKYHTPDGVLRLRFLSDDSPWTTNGGFRLLITRLACER
EDLVARGLDDDEEDVDGDTVQVSAKSPPKKLLTQHHHHHLPQQSHQPQLE
PAFNYTQPNRLGFNLGLQPGLGYPGGLYPPPAGLPPQYTPPCAPQQQQLL
QQQQEQHRFLQQQQLQLQILQQQRLQQQVLQQQQLQQQVQVQHPQQLQLS
QQQQQLQQELPLISDQYQTTSFQPHAVTLKDYDAQTLQQFGGQLDLCCAS
SFNQNHFYLSSPGFPRTVLNYLLPNQQRDCVFYIEKSSPNVCRLRIQFKF
FDFGQNSGGSIGGSFGDGFGGGVSGGLGGGHSGGFGGQHNCNGDFLELDG
QRYCGCRSGYVHKSHWDQGRKALRMRIGQSSSTTSNGFLLEIFQDQDSDG
CRQDAGQGFGLGLQPQQPQRGLGLWPQGLQPQLGLQPQLGLQPQLGLPPQ
TAQMWPLQPGYPGYISGYPLPFSATPYRTARRISYARGIDAQQPSRVVET
NSTRKEFYYFDGDEAFARSAVDDEDEDKAHLGVTTQPQSSSQSIVKPESP
LVTKAFEQSSCSFDYMEVLKLSVDTLWLTKPLCFSPLRSWFPNIFG*
BS27978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7179-PB | 696 | CG7179-PB | 1..696 | 1..696 | 3763 | 100 | Plus |
| CG44085-PH | 756 | CG44085-PH | 316..458 | 191..337 | 217 | 44.2 | Plus |
| CG44085-PL | 833 | CG44085-PL | 393..535 | 191..337 | 217 | 44.2 | Plus |
| CG44085-PI | 833 | CG44085-PI | 393..535 | 191..337 | 217 | 44.2 | Plus |
| CG44085-PC | 836 | CG44085-PC | 393..535 | 191..337 | 217 | 44.2 | Plus |
