BS27979.complete Sequence
800 bp assembled on 2011-10-04
GenBank Submission: KX802624
> BS27979.complete
GAAGTTATCAGTCGACATGAAGGCAGTTACTTCAAGAGTGTTGGGTTCGA
TCCTAGTGTTATTATTGATACATTTAACATCAGCAAAAGAAGCGGAGGTT
CACTTAACAAATCCTCCAACAGAATGCAGACTGGTGTGTAATCCAGGGTA
TCATATCGTGGTTAAAAAGGGTACCTTGTATCATAATGGTAGGAAGCTTG
ACGATAATGCACGGTATGCGCCGAAGATGGCGTGTGATTTGGAGAACAGT
TGCAACTTTAAATTTACGCCACAAACATTAAGTTACATGAATACAGCAAT
TAATGTAGGCACACAACTAACTATTAATTACGACTGCAAGCGGGATAACT
TCCAAGGAGATCCGAGAAGGATAACAGATTATACGAAAACGCAAGGATGT
CCGCAAGACTCTTTTGTTCAGAAACACGTCGCATATTTTAACGATGAAAA
TATTGCTCCCAAGAGGGATACACCTGTCGCGCAAAGGGAAAGGGAAATGA
TTGCCATGGGCGTATGTGCTCAGGTCAAACGTTTTAGGCAAAACAACCCA
AGAACGCCCATCGATCCACATCTTGGCACAGTGTACTTGATATTTGACAA
TAGAACAAGTAAAAATGATTTCATGCCGAGTCCTGATGTTAGAAAGTGCC
AACTTAAGCCCAATTCTCTGACCAAGACATACAAGTATGATTGCGAGAGG
AAAGCGGATAAATGGACATGTACTTTTGCCAGCAAGGGAAGGGACTTGGC
CATAAATGACAAGATTACAAGTCACTTAGGATGAAAGCTTTCTAGACCAT
BS27979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43085-RB | 768 | CG43085-PB | 1..768 | 17..784 | 3840 | 100 | Plus |
| CG43085-RA | 768 | CG43085-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43085-RB | 1193 | CG43085-RB | 298..1065 | 17..784 | 3840 | 100 | Plus |
| CG43085-RA | 925 | CG43085-RA | 30..797 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17645614..17646321 | 784..77 | 3540 | 100 | Minus |
| 3L | 28110227 | 3L | 17646381..17646440 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:28:02 has no hits.
BS27979.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-04 15:56:57 Download gff for
BS27979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43085-RA | 30..796 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:47:27 Download gff for
BS27979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43085-RA | 30..796 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:02 Download gff for
BS27979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43085-RA | 30..796 | 17..783 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:02 Download gff for
BS27979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17645615..17646321 | 77..783 | 100 | <- | Minus |
| 3L | 17646381..17646440 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:47:27 Download gff for
BS27979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17638715..17639421 | 77..783 | 100 | <- | Minus |
| arm_3L | 17639481..17639540 | 17..76 | 100 | | Minus |
BS27979.pep Sequence
Translation from 16 to 783
> BS27979.pep
MKAVTSRVLGSILVLLLIHLTSAKEAEVHLTNPPTECRLVCNPGYHIVVK
KGTLYHNGRKLDDNARYAPKMACDLENSCNFKFTPQTLSYMNTAINVGTQ
LTINYDCKRDNFQGDPRRITDYTKTQGCPQDSFVQKHVAYFNDENIAPKR
DTPVAQREREMIAMGVCAQVKRFRQNNPRTPIDPHLGTVYLIFDNRTSKN
DFMPSPDVRKCQLKPNSLTKTYKYDCERKADKWTCTFASKGRDLAINDKI
TSHLG*
BS27979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43085-PB | 255 | CG43085-PB | 1..255 | 1..255 | 1376 | 100 | Plus |
| CG43085-PA | 255 | CG43085-PA | 1..255 | 1..255 | 1376 | 100 | Plus |
