BS27980.complete Sequence
1382 bp assembled on 2011-09-30
GenBank Submission: KX800634
> BS27980.complete
GAAGTTATCAGTCGACATGGCCCAACCACAGCTGCTGCAAATCAAATTGT
CACGTTTCGATGCCCAACCCTGGGGATTCCGCCTTCAGGGGGGCACGGAC
TTCGCTCAGCCCCTGCTGGTGCAAAAGGTGAACGCCGGCAGCTTGTCCGA
GCAGGCTGGCCTCCAGCCCGGCGATGCGGTGGTCAAGATCAATGACGTGG
ATGTCTTCAATCTGCGTCACAAGGATGCCCAGGACATTGTGGTGCGCTCC
GGCAACAACTTTGTCATCACAGTGCAGCGCGGTGGCTCCACCTGGCGCCC
GCATGTGACACCGACTGGCAATGTGCCGCAGCCCAACTCGCCGTATCTGC
AGACGGTGACGAAGACCTCTCTGGCTCACAAACAACAGGACAGCCAGCAC
ATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCTCCAACGGCGGCGA
TGGCGGCGTGAAGAGCATTGTCAATAAACAATACAACACCCCGGTTGGCA
TTTACAGCGATGAATCTATTGCGGAAACACTCTCGGCCCAGGCGGAGGTT
TTGGCTGGCGGTGTGCTCGGCGTCAACTTCAAGAAGAACGAGAAGGAATA
CCAGGGCGATCGCTCCGAGGTTCTGAAGTTCCTGCGCGAGGAGGAGACCG
GCCAGTCCACTCCAGCATTCGGCAATAGCCATTACGAGCATGATGCACCA
CAGCAACTGCAACAGCCACAACAGCAATACAACCAACACCAGCAACACTA
TCACCAGCAACAACAACAACAGCAATCGAGCACCACTCGCCATGTCAGCG
CCCCCGTGAACTCCCCCAAGCCCCCGAGCACCGGCGGACTCCCAACTGGC
CAGAACATTTGCACCGAATGCGAGCGCCTCATTACTGGCGTTTTCGTGCG
CATCAAGGATAAGAACCTGCACGTGGAGTGCTTCAAGTGTGCCACGTGTG
GCACCTCGCTGAAGAACCAGGGCTACTACAACTTCAACAACAAGCTCTAC
TGCGACATCCACGCCAAACAGGCCGCCATCAACAATCCCCCCACCGGCAC
CGAGGGCTACGTCCCCGTTCCCATCAAGCCCAACACCAAGCTGAGTGCCT
CCACCATCTCATCGGCCTTGAACTCGCACGGATACGGTGGCCACTCGAAC
GGCTACTCCAATGGAAACTCCACCCCTGCTCCGGCACCGGTGAACCAGGG
CTATGCTCGTCCGTTCGGTGCCGCCGCTCCCAAGTCGCCGGTGTCGTATC
CGCCGCAGCAGCAACAGCAGTCGCCGCGTCCCGCTCCCGGTGGCCAAAAC
CCGTACGCCACCCTGCCCCGCAGCAATGTGGGCCAACAAGGTTACGGTTA
CCCCTACACGTATTAGAAGCTTTCTAGACCAT
BS27980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zasp52-RK | 1350 | CG30084-PK | 1..1350 | 17..1366 | 6735 | 99.9 | Plus |
| Zasp52-RW | 6255 | CG30084-PW | 1..1326 | 17..1342 | 6615 | 99.9 | Plus |
| Zasp52-RT | 1956 | CG30084-PT | 1..1326 | 17..1342 | 6615 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zasp52-RK | 1726 | CG30084-RK | 206..1557 | 17..1368 | 6745 | 99.9 | Plus |
| Zasp52-RW | 7088 | CG30084-RW | 206..1531 | 17..1342 | 6615 | 99.9 | Plus |
| Zasp52-RT | 2789 | CG37-RT | 206..1531 | 17..1342 | 6615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15780058..15780280 | 885..663 | 1100 | 99.6 | Minus |
| 2R | 25286936 | 2R | 15778352..15778550 | 1080..882 | 980 | 99.5 | Minus |
| 2R | 25286936 | 2R | 15783088..15783245 | 436..279 | 790 | 100 | Minus |
| 2R | 25286936 | 2R | 15773814..15773967 | 1342..1189 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 15783315..15783468 | 279..126 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 15781773..15781906 | 570..437 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 15803359..15803471 | 129..17 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 15777176..15777286 | 1191..1081 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 15780985..15781080 | 665..570 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:31:12 has no hits.
BS27980.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:31 Download gff for
BS27980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp52-RK | 234..1583 | 17..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:14 Download gff for
BS27980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp52-RK | 206..1555 | 17..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:57 Download gff for
BS27980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp52-RK | 206..1555 | 17..1366 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:57 Download gff for
BS27980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15783088..15783244 | 280..436 | 100 | <- | Minus |
| 2R | 15783315..15783466 | 128..279 | 100 | <- | Minus |
| 2R | 15803361..15803471 | 17..127 | 100 | | Minus |
| 2R | 15771122..15771147 | 1341..1366 | 100 | <- | Minus |
| 2R | 15773816..15773966 | 1190..1340 | 100 | <- | Minus |
| 2R | 15777178..15777286 | 1081..1189 | 100 | <- | Minus |
| 2R | 15778352..15778546 | 886..1080 | 100 | <- | Minus |
| 2R | 15780058..15780277 | 666..885 | 99 | <- | Minus |
| 2R | 15780985..15781079 | 571..665 | 100 | <- | Minus |
| 2R | 15781773..15781906 | 437..570 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:14 Download gff for
BS27980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11664683..11664791 | 1081..1189 | 100 | <- | Minus |
| arm_2R | 11665857..11666051 | 886..1080 | 100 | <- | Minus |
| arm_2R | 11667563..11667782 | 666..885 | 99 | <- | Minus |
| arm_2R | 11668490..11668584 | 571..665 | 100 | <- | Minus |
| arm_2R | 11669278..11669411 | 437..570 | 100 | <- | Minus |
| arm_2R | 11670593..11670749 | 280..436 | 100 | <- | Minus |
| arm_2R | 11670820..11670971 | 128..279 | 100 | <- | Minus |
| arm_2R | 11690866..11690976 | 17..127 | 100 | | Minus |
| arm_2R | 11658627..11658652 | 1341..1366 | 100 | <- | Minus |
| arm_2R | 11661321..11661471 | 1190..1340 | 100 | <- | Minus |
BS27980.pep Sequence
Translation from 16 to 1365
> BS27980.pep
MAQPQLLQIKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPAFGNSHYEHDAPQQLQQPQQQYNQHQQHYHQQQQ
QQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFVRIKDKN
LHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTGTEGYVP
VPIKPNTKLSASTISSALNSHGYGGHSNGYSNGNSTPAPAPVNQGYARPF
GAAAPKSPVSYPPQQQQQSPRPAPGGQNPYATLPRSNVGQQGYGYPYTY*
BS27980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zasp52-PK | 449 | CG30084-PK | 1..449 | 1..449 | 2413 | 100 | Plus |
| Zasp52-PT | 651 | CG30084-PT | 1..444 | 1..444 | 2371 | 99.8 | Plus |
| Zasp52-PS | 787 | CG30084-PS | 1..447 | 1..447 | 2369 | 99.1 | Plus |
| Zasp52-PR | 722 | CG30084-PR | 1..447 | 1..447 | 2369 | 99.1 | Plus |
| Zasp52-PW | 2084 | CG30084-PW | 1..442 | 1..442 | 2367 | 100 | Plus |
