Clone BS27982 Report

Search the DGRC for BS27982

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:279
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG42789-RB
Protein status:BS27982.pep: gold
Sequenced Size:335

Clone Sequence Records

BS27982.complete Sequence

335 bp assembled on 2011-09-30

GenBank Submission: KX801770

> BS27982.complete
GAAGTTATCAGTCGACATGGAGGTTCTTTGGCTGCTTCTTTTGGTATCGC
ATCTGAGTTCAACGCAGGGCGAGGGAAACTGTACCACCTGTGCTGCTTGG
GTCGAGCGTGCGGTATGTGGCTATAATAATAGATGCTTTACGAGTTTCAA
GAGCACCTGCGAAATGGAAATGATCAATTGCAAACTACCGGACGTCTACA
AATTCAAAGAAACACCTTATTATGGACACTGCTTTAGATCCACCATACAA
AAGTGCAAGGCCTATGTCCTGTTGCAGCAGCTGAACAAAAAGGACAACTC
CGTTGAAATGTTCGCTTAGAAGCTTTCTAGACCAT

BS27982.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG42789-RC 150 CG42789-PC 1..150 170..319 750 100 Plus
CG42789-RB 150 CG42789-PB 1..150 170..319 750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG42789-RC 484 CG42789-RC 21..324 16..319 1520 100 Plus
CG42789-RB 392 CG42789-RB 49..301 67..319 1265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26783951..26784107 200..44 785 100 Minus
3R 32079331 3R 26783769..26783887 319..201 595 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:32:06 has no hits.

BS27982.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:32 Download gff for BS27982.complete
Subject Subject Range Query Range Percent Splice Strand
CG42789-RA 22..324 17..319 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:28 Download gff for BS27982.complete
Subject Subject Range Query Range Percent Splice Strand
CG42789-RC 22..324 17..319 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:24 Download gff for BS27982.complete
Subject Subject Range Query Range Percent Splice Strand
CG42789-RC 22..324 17..319 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:24 Download gff for BS27982.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26783769..26783887 201..319 100 <- Minus
3R 26783951..26784106 45..200 100 <- Minus
3R 26784160..26784187 17..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:28 Download gff for BS27982.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22609491..22609609 201..319 100 <- Minus
arm_3R 22609673..22609828 45..200 100 <- Minus
arm_3R 22609882..22609909 17..44 100   Minus

BS27982.pep Sequence

Translation from 16 to 318

> BS27982.pep
MEVLWLLLLVSHLSSTQGEGNCTTCAAWVERAVCGYNNRCFTSFKSTCEM
EMINCKLPDVYKFKETPYYGHCFRSTIQKCKAYVLLQQLNKKDNSVEMFA
*

BS27982.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG42789-PC 49 CG42789-PC 1..49 52..100 268 100 Plus
CG42789-PB 49 CG42789-PB 1..49 52..100 268 100 Plus