BS27983.complete Sequence
1952 bp assembled on 2013-09-16
GenBank Submission: KX803187
> BS27983.complete
GAAGTTATCAGTCGACATGTTCGCGGGAATAAGGAAACGCCTGGCACGCA
AGCAAAACGAGAAGGACTGCGATGAGGACGACAAGGAGGATGTGCTCGAT
AGTATGCCACCACCTCCGAATTACATACAGATCTCGCAGGGCAGGATTCA
GTTGGTCCACCAGCCGAGAACGCCCGTTGAATCGGAGGCGGGAACTCTGT
CCCTGGAGCGGCACGGGGGCTCGATCTCCGGATCCGGCGGCTGTGATAAG
AGCCAATGCGGGTCGCCTACGTTCGAGAAGGAATTGCGCGAACAAATTGA
GAACATGAATCGCATTATGAAATCCAAAGAACGCAAGCAAATGCAGACAT
GTCGGGATCACAAGGCACTGCAGACGCGCTTTGCCCGACAGGAGAGCCTG
CTCCAATCGATGCAGCAGGAGAATCGATCCTTGCTCACACGAATCCGTCA
GTATGAGCACTGCCTGGATGATGTGATGCGCAAGGTGGTGGACGCCATTG
TGGCAGAAGATAATCTCCGTGAGGAGGTGAGCATGCTGAAGGGCCGGGTT
CGAGATCTGGAGGCGCAAAATGCTGCTCTGTCCGCCAGTCCGGTGAAGGG
CAGGGATGAAGGCTACTGCACCATGAGCAGTGGGCAGCCGCAGCCGTCGA
ATGGGCATCTGGAAGATCTGCCCGAGGAACCGGAACAGTGGCTCTTGCCT
GCCGAACCCTGCTCCACAGAAATGGAGGACTGGAGCATGTCGCAGGAGGA
ACTGGCAGTGATGACGTTCGACGACGAGCGGGATCCACATCACCCTCATC
TCCAGCAGCAGCGGAGGAAGAGGGATCACGACTGGCTGTGGCCATCGAGC
GACTTTATTAACTCCACCACCGTGGAAACGGATTCAGTGGCCGATGGCAT
TACCCAGCTGCTGCAGCAGAAGATTGTCTACTCCGAGGACGAGGAGGTGG
CCTGCACGGACTTTACCAACGACTTCTACAAACTGGTTAACATCCGTTCG
AATTCCTCGCGCAGTCTTTACTCATATTTAGAGGGTGAGACGGATGACGA
GGATGAGGACGACGACGATGGGGAGGATTCCAGTATCTCAGAGAGCCAGG
TGGGTCCCGCTGGCAGAATCAGTCCCACGCCCAGTGAGGCGGGAAGGGCC
CAGTTGACCAGCTGCTCCTCAAGCGAAACAGACGAACTTTCCGCCAGCCA
GGCTAAGAAGGATGAGGAACCGGACTACGCGGTTATCGACGAGTGCCGGC
GGAGGGTTAGCGACATTGAAATTGAGGATGTGCCCATGATTGTCAGCAGC
ACGCCAATGAAACCACTGGATGAGCAGCAGTGTATTGCTCAGATCATCAA
GAGTGAACTACGTCGACCGCCGCACGTCCTGGTGAAATCGAAATCGGTGC
TAGAAGACCAGGAACCCAGTTGCATCCTCAGACACAATCAACGCCGCGAA
CTGGAGTCCACCGTGGTGTGTAGCGATAGCATCAGCTGTGCCATGATGAA
CAAGTTGGCCAAAGAGGTGGTGCCACCGGCGCCTGGAATGGTTACCAAGC
TGAAGGAGCGGATGCTGCTGAGACAGGCTTCCACGCCTCCGACGGCCAGC
TCCTGGCGCAGGAGCAATGGCTGGAAGAGGGTAACATCACCGGTTCATCC
ACCGGTGGCTGTCTCGCCCAAAAAGAAGGCAGCGAAGTCAACGGAGCCGC
CAAAGAGTTGCCTGCCCAAGGCGCAGCCCACCAGAATTCCAACGAGCATC
CATTCGTCGGTGTCCTCGTCCTCCTCGATGTCCTCCTCCTGCTCGCCCTC
GCCCTCCTCCCCCTCGCCGCAATCGCCACAGCAAAGGTCACCGGGTCAGC
AGACACAGCAACAACAGCAACAGCAGCAGCAGCGAAAATCGAAGATTCCT
CCACCAGTTCCCGTGCGAAGATCCTACGCCAGTTAGAAGCTTTCTAGACC
AT
BS27983.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42663-RC | 1920 | CG42663-PC | 1..1920 | 17..1936 | 9600 | 100 | Plus |
| CG42663-RB | 1989 | CG42663-PB | 304..1989 | 251..1936 | 8430 | 100 | Plus |
| CG42663-RD | 1986 | CG42663-PD | 304..1986 | 251..1936 | 8350 | 99.8 | Plus |
| CG42663-RB | 1989 | CG42663-PB | 1..234 | 17..250 | 1170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:04:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42663-RC | 3999 | CG42663-RC | 1133..3052 | 17..1936 | 9600 | 100 | Plus |
| CG42663-RB | 4068 | CG42663-RB | 1436..3121 | 251..1936 | 8430 | 100 | Plus |
| CG42663-RD | 4065 | CG42663-RD | 1436..3118 | 251..1936 | 8350 | 99.8 | Plus |
| CG42663-RB | 4068 | CG42663-RB | 1133..1366 | 17..250 | 1170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12749521..12750275 | 921..1675 | 3775 | 100 | Plus |
| 2R | 25286936 | 2R | 12748908..12749461 | 369..922 | 2770 | 100 | Plus |
| 2R | 25286936 | 2R | 12750336..12750598 | 1674..1936 | 1315 | 100 | Plus |
| 2R | 25286936 | 2R | 12734917..12735119 | 48..250 | 1000 | 99.5 | Plus |
| 2R | 25286936 | 2R | 12747678..12747747 | 304..373 | 350 | 100 | Plus |
| 2R | 25286936 | 2R | 12746607..12746661 | 249..303 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:04:38 has no hits.
BS27983.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:27 Download gff for
BS27983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42663-RC | 1138..3052 | 22..1936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:45 Download gff for
BS27983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42663-RC | 1138..3052 | 22..1936 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:45 Download gff for
BS27983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12722977..12723006 | 22..51 | 100 | -> | Plus |
| 2R | 12734921..12735119 | 52..250 | 100 | -> | Plus |
| 2R | 12746609..12746661 | 251..303 | 100 | -> | Plus |
| 2R | 12747678..12747747 | 304..373 | 100 | -> | Plus |
| 2R | 12748913..12749461 | 374..922 | 100 | -> | Plus |
| 2R | 12749523..12750275 | 923..1675 | 100 | -> | Plus |
| 2R | 12750338..12750598 | 1676..1936 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:27 Download gff for
BS27983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8610482..8610511 | 22..51 | 100 | -> | Plus |
| arm_2R | 8622426..8622624 | 52..250 | 100 | -> | Plus |
| arm_2R | 8634114..8634166 | 251..303 | 100 | -> | Plus |
| arm_2R | 8635183..8635252 | 304..373 | 100 | -> | Plus |
| arm_2R | 8636418..8636966 | 374..922 | 100 | -> | Plus |
| arm_2R | 8637028..8637780 | 923..1675 | 100 | -> | Plus |
| arm_2R | 8637843..8638103 | 1676..1936 | 100 | | Plus |
BS27983.pep Sequence
Translation from 16 to 1935
> BS27983.pep
MFAGIRKRLARKQNEKDCDEDDKEDVLDSMPPPPNYIQISQGRIQLVHQP
RTPVESEAGTLSLERHGGSISGSGGCDKSQCGSPTFEKELREQIENMNRI
MKSKERKQMQTCRDHKALQTRFARQESLLQSMQQENRSLLTRIRQYEHCL
DDVMRKVVDAIVAEDNLREEVSMLKGRVRDLEAQNAALSASPVKGRDEGY
CTMSSGQPQPSNGHLEDLPEEPEQWLLPAEPCSTEMEDWSMSQEELAVMT
FDDERDPHHPHLQQQRRKRDHDWLWPSSDFINSTTVETDSVADGITQLLQ
QKIVYSEDEEVACTDFTNDFYKLVNIRSNSSRSLYSYLEGETDDEDEDDD
DGEDSSISESQVGPAGRISPTPSEAGRAQLTSCSSSETDELSASQAKKDE
EPDYAVIDECRRRVSDIEIEDVPMIVSSTPMKPLDEQQCIAQIIKSELRR
PPHVLVKSKSVLEDQEPSCILRHNQRRELESTVVCSDSISCAMMNKLAKE
VVPPAPGMVTKLKERMLLRQASTPPTASSWRRSNGWKRVTSPVHPPVAVS
PKKKAAKSTEPPKSCLPKAQPTRIPTSIHSSVSSSSSMSSSCSPSPSSPS
PQSPQQRSPGQQTQQQQQQQQQRKSKIPPPVPVRRSYAS*
BS27983.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42663-PC | 639 | CG42663-PC | 1..639 | 1..639 | 3323 | 100 | Plus |
| CG42663-PB | 662 | CG42663-PB | 1..662 | 1..639 | 3289 | 96.5 | Plus |
| CG42663-PD | 661 | CG42663-PD | 1..661 | 1..639 | 3272 | 96.4 | Plus |
