BS27984.complete Sequence
2885 bp assembled on 2013-09-16
GenBank Submission: KX804156
> BS27984.complete
GAAGTTATCAGTCGACATGGTCTACATCATACCGTTCTTTAGCCACAATG
ACCCGCCCGACATGATCATCACCAAAGAAAAAAGCATGGCTTGCCTGCAG
GATGAGTTCGGTCACCTAGGCATCGCCGCTACAGACCTGCCGTTCAAATC
CTCCGACCTGGACTCTCCGCCCCGCCTGCAGCATCACAACAACTATGCGG
AGATCACGGACAGCAGTGCGGAAAACACGTGCCAACAGCGCTGGCCACCT
CATGTGGGAGGAGCAGGGGCGGCCTTCGGGCATCCGGACAAGCCCATTGG
CTGGATGTACGGACTGCTCGGATGCATGAAGCCCGTGCTTTCGTTCATCG
GGAAGACGGGGGTGATCGAGGTGAAGAGTCAGCGGAGCGAGGACTGGCAG
ATTCCATTTGAGTCCATCACCGAGTTGGAATGGCTGGGAAGCGGAGCACA
AGGAGCCGTCTTCAGTGGCAGGCTAAAGAACGAGACTGTGGCGGTCAAGA
AGGTGAAGGAGCTGAAGGAAACGGACATCAAGCATCTCAGGAAGCTCGAT
CATGAGAACATTATTAAGTTCAAAGGGGTTTGCACGCAGTCACCGGTGTT
CTGCATCATCATGGAGTTCTGTCCGTATGGCCCACTGCAGAATATCCTGA
AGGAGGAGCAAGTCATGTTACCGTCCCGCTTGGTCTCTTGGTCCAAGCAA
ATTGCCCTGGGCATGCAGTATCTGCATTCCCACAAGATCATACACCGAGA
TCTAAAGAGTCCAAACATACTGATTAGTACAAATGAGGTGGTGAAGATCA
GCGACTTTGGCACCAGTCGCGAGTGGAACGAGATCAGCACCAAGATGAGC
TTTGCTGGTACCGTAGCCTGGATGGCTCCGGAAGTGATCAGGAATGAGCC
GTGCTCCGAGAAGGTGGACATTTGGTCGTACGGTGTGGTGCTATGGGAAA
TGCTCACCTGCGAGATACCTTACAAGGATGTGGACTCATCAGCCATAATC
TGGGGTGTGGGCAACAACTCTCTCAAGCTGCTGGTCCCGAGCACCTGTCC
GGAGGGATTTAAGTTGCTGGTTAAGCTCTGTTGGAAAAGTAAGCCCCGAA
ATCGGCCATCGTTCCGGCAGATACTCTCGCACTTGGATATCGCCGGACCG
GAACTGCTGAGAAAAACCGAGAAGCAATATTTTGAGACGCAAAAGTCGTG
GAAGGAGGAGGTGAGATCTCACTTGAAGGAGATTACCCAAAATGGCACCA
ACATACACAAGTACGAGCAAGATCTGATTAAGCGGCGGACGGCAGAGTGG
CGACATGCCCAGGATATCCGAATGGTGTACGAGGATAAGTTGCAAAAGAC
CAACCAGCTTTTCTTCGAACTCAGCGAGTGCATGTCCCAGTTGCAGGAAA
AGGAGAAGGAAATCGCAGAACGAGAACGGAAACTACCAGGAAGTGGCTAC
AAACCCAATCGACGTTTTGGCAACACGATCCGAAAAATGCAACACTATCG
CCGACGCCTGAACCCTGCTCCTGCCGCCATTCAGCAACAATCAACAACGC
CGGATCCAGAGACTACGCCGGAGTCCCCTGTGAAGTGTATGCTATATGCC
CAGCTTGATAGCAATTGCCAACCCAAATCGTATCTGGCCAATATCATCCC
GAGTAGCGGCTTAGGCGCACCCATGCCCAATAAAAACAAGAAGGTCTTCC
GGCACCGACGCAACGCATCTGGTTCCTTCGGTGCACCACCCAAGTACAGT
CCGACGAGGGATCGTCGTTACCAGAGCGAACCGGAGAACCGAAAGGTGCA
GCTGGTGGAGAGACAAACCCAAACAGATGCCATGGACGTGAGTGAAACGG
ATATTAGTCCTAGCGCGGAGGCTCCTCGATCTCAGCCCATCGACGTGCCA
GTTCCGAATCATCGCCAACTGCCGCTGCAACTGCAGAGAGTACAGAAAAT
TGCCCAAGCTCAGGCGAGGGCTCGAAGTGGAAGCACTTCATCTGCAGCTG
GCGCCGTGAATCCCGCTTGTCCGTCGAATGGCAACTCTCTGAGCACAAGC
GAGCTGACCTACCAAGATGCCTGCTCTAGTCCCGATCAGCTCATCGACGA
TGTAATGAACAGCAACGAACGTTTGGACATGACTGAATGCTGCAGTGACA
ACGAAAACCTGGAACGTCTAGGCCGCAAAGTCATCGAATTCATCAACGAA
AACCGCCTGTCCATTCAGTCAAACACGAACTCCGTGAGCAATGCCGATAA
TGGGAATGGAGGAGCCTCTCCTCTTGAATTGCGTGAGAGTGGTAACAGTC
CGTGTTTAAGTCGATGCAGCAGCACACATAGCAAACGGCGGAAGCATCCA
CTGGGGGACAATCCAAACGGCAGTTCGATAGGCAATGCCAACGGGGAGTC
GCATGAGCAGGACAGCTGGTCGGACGAGGAGGGCGAGACCACGGACTACA
AGTACGCTCTGCGGAGAAGAAGCATTGGCCGCCAGCCCATAGCTCGTGGC
ATGCGACCCCGTCGCAGCTACAAGGCTCCACTCTCCCAGAAGATTGCCAT
CCACAAGCGCAATGTGGTAATCGTATCAGACGAGGAGGAAAACACCTCCG
AGTACAGTCACTCACCCTCCAGCCAGCACTCGACACTAGAGAGCAATACC
GACATTGCGGACATGAAGAAAACTCAGGCCACATCCACCTCAAGCAACAG
CTATAGCGAGCCCGAAGACGATTCGAGTGATTCCAGCGATGAGGAGCAGG
GAAACCGGCCGACGGAAGCCAAGGCCGAGGGTCCAGCTTTGCCTATGGGC
GCCGTACGCAGCAGCGATATTATATCCATACCTACTTTTGAGGCTGATGG
CGCCGTCAATATGGTCTAAAAGCTTTCTAGACCAT
BS27984.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wnd-RD | 2853 | CG8789-PD | 1..2853 | 17..2869 | 14265 | 100 | Plus |
| wnd-RC | 2934 | CG8789-PC | 148..2934 | 83..2869 | 13935 | 100 | Plus |
| wnd-RB | 2934 | CG8789-PB | 148..2934 | 83..2869 | 13935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wnd-RD | 3645 | CG8789-RD | 662..3515 | 16..2869 | 14270 | 100 | Plus |
| wnd-RC | 4512 | CG8789-RC | 584..3370 | 83..2869 | 13935 | 100 | Plus |
| wnd-RB | 4307 | CG8789-RB | 379..3165 | 83..2869 | 13935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19626012..19626912 | 2472..1572 | 4505 | 100 | Minus |
| 3L | 28110227 | 3L | 19627444..19628097 | 1419..766 | 3270 | 100 | Minus |
| 3L | 28110227 | 3L | 19629265..19629755 | 573..83 | 2455 | 100 | Minus |
| 3L | 28110227 | 3L | 19625548..19625946 | 2869..2471 | 1995 | 100 | Minus |
| 3L | 28110227 | 3L | 19628152..19628343 | 765..574 | 960 | 100 | Minus |
| 3L | 28110227 | 3L | 19627231..19627384 | 1573..1420 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 19632367..19632435 | 84..16 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:04:34 has no hits.
BS27984.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:25 Download gff for
BS27984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wnd-RD | 663..3513 | 17..2867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:43 Download gff for
BS27984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wnd-RD | 663..3513 | 17..2867 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:43 Download gff for
BS27984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19625550..19625944 | 2473..2867 | 100 | <- | Minus |
| 3L | 19626012..19626910 | 1574..2472 | 100 | <- | Minus |
| 3L | 19627231..19627384 | 1420..1573 | 100 | <- | Minus |
| 3L | 19627444..19628097 | 766..1419 | 100 | <- | Minus |
| 3L | 19628152..19628343 | 574..765 | 100 | <- | Minus |
| 3L | 19629265..19629753 | 85..573 | 100 | <- | Minus |
| 3L | 19632367..19632434 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:25 Download gff for
BS27984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19618650..19619044 | 2473..2867 | 100 | <- | Minus |
| arm_3L | 19619112..19620010 | 1574..2472 | 100 | <- | Minus |
| arm_3L | 19620331..19620484 | 1420..1573 | 100 | <- | Minus |
| arm_3L | 19620544..19621197 | 766..1419 | 100 | <- | Minus |
| arm_3L | 19621252..19621443 | 574..765 | 100 | <- | Minus |
| arm_3L | 19622365..19622853 | 85..573 | 100 | <- | Minus |
| arm_3L | 19625467..19625534 | 17..84 | 100 | | Minus |
BS27984.pep Sequence
Translation from 16 to 2868
> BS27984.pep
MVYIIPFFSHNDPPDMIITKEKSMACLQDEFGHLGIAATDLPFKSSDLDS
PPRLQHHNNYAEITDSSAENTCQQRWPPHVGGAGAAFGHPDKPIGWMYGL
LGCMKPVLSFIGKTGVIEVKSQRSEDWQIPFESITELEWLGSGAQGAVFS
GRLKNETVAVKKVKELKETDIKHLRKLDHENIIKFKGVCTQSPVFCIIME
FCPYGPLQNILKEEQVMLPSRLVSWSKQIALGMQYLHSHKIIHRDLKSPN
ILISTNEVVKISDFGTSREWNEISTKMSFAGTVAWMAPEVIRNEPCSEKV
DIWSYGVVLWEMLTCEIPYKDVDSSAIIWGVGNNSLKLLVPSTCPEGFKL
LVKLCWKSKPRNRPSFRQILSHLDIAGPELLRKTEKQYFETQKSWKEEVR
SHLKEITQNGTNIHKYEQDLIKRRTAEWRHAQDIRMVYEDKLQKTNQLFF
ELSECMSQLQEKEKEIAERERKLPGSGYKPNRRFGNTIRKMQHYRRRLNP
APAAIQQQSTTPDPETTPESPVKCMLYAQLDSNCQPKSYLANIIPSSGLG
APMPNKNKKVFRHRRNASGSFGAPPKYSPTRDRRYQSEPENRKVQLVERQ
TQTDAMDVSETDISPSAEAPRSQPIDVPVPNHRQLPLQLQRVQKIAQAQA
RARSGSTSSAAGAVNPACPSNGNSLSTSELTYQDACSSPDQLIDDVMNSN
ERLDMTECCSDNENLERLGRKVIEFINENRLSIQSNTNSVSNADNGNGGA
SPLELRESGNSPCLSRCSSTHSKRRKHPLGDNPNGSSIGNANGESHEQDS
WSDEEGETTDYKYALRRRSIGRQPIARGMRPRRSYKAPLSQKIAIHKRNV
VIVSDEEENTSEYSHSPSSQHSTLESNTDIADMKKTQATSTSSNSYSEPE
DDSSDSSDEEQGNRPTEAKAEGPALPMGAVRSSDIISIPTFEADGAVNMV
*
BS27984.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wnd-PD | 950 | CG8789-PD | 1..950 | 1..950 | 5002 | 100 | Plus |
| wnd-PC | 977 | CG8789-PC | 33..977 | 10..950 | 4886 | 98.4 | Plus |
| wnd-PB | 977 | CG8789-PB | 33..977 | 10..950 | 4886 | 98.4 | Plus |
| wnd-PA | 977 | CG8789-PA | 33..977 | 10..950 | 4886 | 98.4 | Plus |
| slpr-PD | 1148 | CG2272-PD | 83..487 | 94..474 | 517 | 31.7 | Plus |
