Clone BS27991 Report

Search the DGRC for BS27991

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:279
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG42717-RA
Protein status:BS27991.pep: gold
Sequenced Size:323

Clone Sequence Records

BS27991.complete Sequence

323 bp assembled on 2011-09-30

GenBank Submission: KX802439

> BS27991.complete
GAAGTTATCAGTCGACATGCGGAATAGCACTTTGATTCTCATCGCCGTCG
TTATGACTGTTTGCATTTTTGCGAATGTAACTGGAGTAACTCGATGCAAG
GGAAAGCCCAAGGATTCAAAGTGTGCCGGGAATCTCGATGGCGGTAACAA
TCGCAAAAGCAAATGCAAGAAATCGGCCAACAAAAATATGTGGCACTACA
ATACACGGACAAAAAACTGCACACAATTCAACTACCTAGGATGTGGTGGC
AATAATAATCGCTGGTGCACAAAAGCATTATGTGAAGCCTGTCGACGACC
AAGATAAAAGCTTTCTAGACCAT

BS27991.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG42717-RA 291 CG42717-PA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG42717-RA 373 CG42717-RA 34..326 17..309 1465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16032809..16033007 309..111 995 100 Minus
3L 28110227 3L 16033064..16033157 110..17 470 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:25:06 has no hits.

BS27991.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:27 Download gff for BS27991.complete
Subject Subject Range Query Range Percent Splice Strand
CG42717-RA 25..313 17..305 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:32 Download gff for BS27991.complete
Subject Subject Range Query Range Percent Splice Strand
CG42717-RA 34..322 17..305 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:18 Download gff for BS27991.complete
Subject Subject Range Query Range Percent Splice Strand
CG42717-RA 34..322 17..305 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:18 Download gff for BS27991.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16032813..16033007 111..305 100 <- Minus
3L 16033064..16033157 17..110 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:32 Download gff for BS27991.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16025913..16026107 111..305 100 <- Minus
arm_3L 16026164..16026257 17..110 100   Minus

BS27991.pep Sequence

Translation from 16 to 306

> BS27991.pep
MRNSTLILIAVVMTVCIFANVTGVTRCKGKPKDSKCAGNLDGGNNRKSKC
KKSANKNMWHYNTRTKNCTQFNYLGCGGNNNRWCTKALCEACRRPR*

BS27991.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG42717-PA 96 CG42717-PA 1..96 1..96 541 100 Plus
CG42538-PA 89 CG42538-PA 4..89 11..94 183 37.2 Plus
CG42713-PA 92 CG42713-PA 4..85 9..90 171 32.9 Plus
CG42713-PB 92 CG42713-PB 4..85 9..90 171 32.9 Plus
CG42537-PA 90 CG42537-PA 5..86 6..90 167 38.4 Plus