Clone BS27992 Report

Search the DGRC for BS27992

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:279
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG42728-RA
Protein status:BS27992.pep: full length peptide match
Sequenced Size:503

Clone Sequence Records

BS27992.complete Sequence

503 bp assembled on 2011-09-30

GenBank Submission: KX805084

> BS27992.complete
GAAGTTATCAGTCGACATGCAGCAATCTTTGCGCGTGGAACTGCTATTGA
TCGTTTACGGGTTGATTCTCGTTGTCTGGGGAATCAATGGATTAAACATA
CCCGAGTGCAGTGGCCAGAATGGATTTATTAACAATACGCGATCCAATTG
CAATTACTCCCTCATCAATTGCTCTGGCCAGAACTCGATGTTCTGCACGG
ACAACACGACCTGCAATGCCAACTTCACCTGTAGCGACATACTTCCGGTG
GATAATTCAACAGCACTACCCATAAGCACAACTCCCAATGTGGTAACCAC
AGCCTCGACAACTGTTTCACCTTCCGATATTCGACGAGAGTGTCGTCAGG
GTGTTACCAAAAGATTTAGCTATCCGCAGAATTGTAACTACTTCTACTAT
TGCGTTGATGGCTTTCTGCTGGTGGAGCAATGTCCTATTGGCTACGCATT
CGATCCCCAAACTGGAGCTTGTGGTGGACGTACGTAAAAGCTTTCTAGAC
CAT

BS27992.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG42728-RA 471 CG42728-PA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG42728-RA 577 CG42728-RA 16..486 17..487 2355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15527711..15528181 487..17 2355 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:25:39 has no hits.

BS27992.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:29 Download gff for BS27992.complete
Subject Subject Range Query Range Percent Splice Strand
CG42728-RA 16..484 17..485 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:44 Download gff for BS27992.complete
Subject Subject Range Query Range Percent Splice Strand
CG42728-RA 16..484 17..485 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:34 Download gff for BS27992.complete
Subject Subject Range Query Range Percent Splice Strand
CG42728-RA 16..484 17..485 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:34 Download gff for BS27992.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15527713..15528181 17..485 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:44 Download gff for BS27992.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15520813..15521281 17..485 100   Minus

BS27992.pep Sequence

Translation from 16 to 486

> BS27992.pep
MQQSLRVELLLIVYGLILVVWGINGLNIPECSGQNGFINNTRSNCNYSLI
NCSGQNSMFCTDNTTCNANFTCSDILPVDNSTALPISTTPNVVTTASTTV
SPSDIRRECRQGVTKRFSYPQNCNYFYYCVDGFLLVEQCPIGYAFDPQTG
ACGGRT*

BS27992.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG42728-PA 156 CG42728-PA 1..156 1..156 850 100 Plus
CG42729-PA 185 CG42729-PA 4..172 10..152 163 28.2 Plus