BS27993.complete Sequence
873 bp assembled on 2011-09-30
GenBank Submission: KX800159
> BS27993.complete
GAAGTTATCAGTCGACATGCATTCCAAGGGAAATAACCAGTGCTTACTGT
TCACCTTGGTTTTGGGCTTACTGGGAGGCGCGGGACATTGTTATGTAGTC
GAACCACCTATCGTTCACGTGGAAATGGAAAAAGCCGGCATGCACAGGAC
CCTTAATTACCGTCTGCGGTTCGATATACCCTTGGTGGGCAAGGACTGCG
AGTATGCGCTGGTCCAGGATTTGCCCGCATCCGTTTACATAAGCACAGAC
GAACTGGATGACCTGCAGCGTTTGAAGAGGTTAAATGCCATCTATCCTAA
GTTCGTCAACATTGAAGTAGCCACGGAACGGGCGCAGCCCTTCTCCGTTT
TACTGCGCGGTACACCAAAGATTACGGAATCGCTGGCTCTGCCCGTGCAT
TTTCGCTACCATGCCCCCAGTGATAAGCGTTTGGCGGCAACGGTGGCCAT
ACCCCTACCCGAGCTCTATCTCAACTGCCCGATGGCTGATAGTGCGCTCA
TCGAAAACGAGTTGGTTGCCCGGCCCGATAAGCTGTACTGCCTGAATGCG
CCGGAAAGCCGTTTCGACGAGAACCATATCAAGGATGGCCAACCCACGAC
CATGGCTAATCTGGAGCGCTGCAACTGGAGGCGGGTGCACGTGGACTGCC
AGCTAAAGATGCCGCTGCGTGCCGAGATTCCGGTAGGCCATGCTAGCGCC
TACGGTCCAGTTCTGTGCGGCACCATCCTGCTAGGTTGGTCTCTGGCCCT
GTGGACCATCATCCACTCGATGGCCAACACGCGACGCATCAATCAGCGCC
TCAACGAGCAGCGACTTCTGCAGCAAAAAGTCAAGTAAAAGCTTTCTAGA
CCATTCGTGGGCGGCGCAAGGGG
BS27993.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30381-RB | 714 | CG30381-PB | 1..714 | 125..838 | 3570 | 100 | Plus |
| CG30381-RC | 732 | CG30381-PC | 39..732 | 145..838 | 3470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30381-RB | 1177 | CG30381-RB | 33..854 | 17..838 | 4110 | 100 | Plus |
| CG30381-RC | 1195 | CG30381-RC | 33..872 | 17..838 | 3895 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7929981..7930390 | 838..429 | 2050 | 100 | Minus |
| 2R | 25286936 | 2R | 7930452..7930601 | 429..280 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 7930660..7930795 | 280..145 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 7930853..7930984 | 148..17 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:26:11 has no hits.
BS27993.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:30 Download gff for
BS27993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30381-RB | 33..857 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:09:06 Download gff for
BS27993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30381-RB | 33..857 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:47 Download gff for
BS27993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30381-RB | 33..857 | 17..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:47 Download gff for
BS27993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7929978..7930389 | 430..841 | 99 | <- | Minus |
| 2R | 7930452..7930600 | 281..429 | 100 | <- | Minus |
| 2R | 7930660..7930792 | 148..280 | 100 | <- | Minus |
| 2R | 7930854..7930984 | 17..147 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:09:06 Download gff for
BS27993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3817483..3817894 | 430..841 | 99 | <- | Minus |
| arm_2R | 3817957..3818105 | 281..429 | 100 | <- | Minus |
| arm_2R | 3818165..3818297 | 148..280 | 100 | <- | Minus |
| arm_2R | 3818359..3818489 | 17..147 | 100 | | Minus |
BS27993.pep Sequence
Translation from 16 to 837
> BS27993.pep
MHSKGNNQCLLFTLVLGLLGGAGHCYVVEPPIVHVEMEKAGMHRTLNYRL
RFDIPLVGKDCEYALVQDLPASVYISTDELDDLQRLKRLNAIYPKFVNIE
VATERAQPFSVLLRGTPKITESLALPVHFRYHAPSDKRLAATVAIPLPEL
YLNCPMADSALIENELVARPDKLYCLNAPESRFDENHIKDGQPTTMANLE
RCNWRRVHVDCQLKMPLRAEIPVGHASAYGPVLCGTILLGWSLALWTIIH
SMANTRRINQRLNEQRLLQQKVK*
BS27993.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30381-PB | 237 | CG30381-PB | 1..237 | 37..273 | 1243 | 100 | Plus |
| CG30381-PC | 243 | CG30381-PC | 1..243 | 37..273 | 1226 | 97.5 | Plus |
