BS27995.complete Sequence
2721 bp assembled on 2013-09-16
GenBank Submission: KX804645
> BS27995.complete
GAAGTTATCAGTCGACATGTTGTTTTGGAAGAGGCGTCTTCAGCGATCGA
GCAGCTCTTCGAGTGCGATTCAGGAGCGTCGTTTTTTTGGCATCCTCCGT
TCGGCGAAAAGGAAGGACGCTGCCACATCGTTACCAACCTATCGTCACAA
TGGCGACAACGTGTCTATCACCACTGCCCCACCTGCGGATAGACTGCCTC
TGGGTTACGAGGGAGCTGGAACTATAGAGCTGCAGGCTCAGGAGAACGAC
TACGTGCTTGAGGAGTCCGCCCTACGAGTCCCACTCTCCCCGCCGCCGAA
CTACTCTCCGCATCCTTTGACCCCACCGCCCAGTTACACGGAGAGACCAA
GATCAGTCCAGGAACACAGATCGCACTTGGCCGAGGCACTGCATCCAGCT
GCCCCCGCACGTGTAGTGATATTTCCCCCAGTAGGCGCAAATACAGCAGC
TAGCGAACAGGCAGCACGTCAACAAGCCAGAAGGAGACGGCGACTCCGGG
AGCTTCAGCAGCAGCAGCTGCGATTCGCCTCCAGCACCGATAGCTCCAGT
AGCTCCGGATCCAGTTGCTCCGAATTAGGGAGCGACAGTGCTAGCAGAAG
GCAGCGTCGACGCAGGCGGGGATTAAGGGATGCCTATTGTCCAGATCTTC
TGAACGCGTGCTCCCTGATCCTCCAGAACCCCGGCAGCAGTGACAGTTCC
GTGGGTAACTTCACGGCCACGCCCCCGCCTCCGGTGCGAGCACCTGGTCA
CCGGGATCAGGAGGAGAGCTTCGAGTACAGCTCCGACTATGTGGAGATCG
ACGAGCTGCTGCCACTAGTCGCCGGCGGGAGAGCGAAGAGCACTCCGCAG
CTGGCGATGGGTCAAAACCTGAGCCTGCGACGGCCGCGCATCTCATTGAC
CTGGGTGCTCCGAGAGCAGCAGCAGACGCAGCAGGCTCCTCCGTCGCAAA
CACCCCCATCCCCGCAGAAGGAGGCAGCGAAGGAATCGGACAGCCAGGTG
CTGGATCGCAAGGAGAACGAAGTCTTCCCGCCCAGAACAGAGCCCGTGCC
CACCCAGCTGGATGTCACCAAGAAGCGGTACCGTGTTAAGCAGCTACCAA
GTGGTGGTGAGCCGCTCAATGGCTATGCCACCACGCCCACCGCCCACCAG
GCTCCTCCCAACGGTCACCTGGCCAACCAGAAGTTCTTCAGCAACCAAAA
CCTGCTGGACGTGTCACGGAGCGGTCCCAGCAGTGCTCCAGTGGCCGCCG
CCTCCACCAAAGAGCTGCTCTTCGTGTGCACACCCCAGCGGGCGCCCAGG
ACCGATAGTCATAGCGAAGCCCTGCTTCTGGCCAGAAAGCGAAACGAGAT
CCGTAAGAAGCTGGCCTCCCGCCTGCAGCAGGCAAGATCCAGTGCCTCGC
AGGCGGGTGAGGCCAGGGGATCGGTCACGGGAGCGGAGTCTGTAAAGTGC
ACCTCCTACTCGGAGCCCAGTTTGGTGGCTGCCTCGGAGGGCGGCGGAGT
GGGGGGCTCGGGCGGAGGAGCAGCTGCCCCCCAGCAGCAGCGGAGACATA
GGCATCGCAAGCGTCGGGATCGCAATCGTGTGCAGAGATTTGGCTATGAG
ATCCACAACGTGGACGAGTTTCTCTCCCGCTGCTCTCTGGCCACTCCCGG
CAATATTCCCGTGGTTCTTTCCACGGCCAGCACCCTATACCAAACGAGAC
CAGGTGGCTACCAACTGGAGATCCCTCTGCCCCTGGGCATGGTGGTGAAT
GCGGTTTTCAAGAACCAGAACTGGCTGTATGTGCAAACGCCCCACGCGGA
GGAGGGCTATGTGGGCTATGCCTGCTGCCTGCCCCTTGGGATTCTGCCCC
AGCAGGCAAGAGCGGGCTCCAGGAACACCCCCTGCTGGGAGTCCAATGCG
GATGTCTTCCCCCGCCCATGTGGCAACATGACGGACTCGGAGAAGGAGAT
CCGCCTGCGTGGTGGCACCCGATCCGATGGCGCCCGCACTCCACGCAGCT
CAAAGCCCACTGAAGATGTCCTCAAGATCGGATCCACCACCATCAACAAC
AACAACAACCATAGCAATAATAATAACCAAGCGAAGTGCGGGAGCACAAC
CAGCTCCTTGTACGGAGAACAACAGGTGGACAAGCTGTATCTGAGGGCCG
CATCCAAGCCGCGCCTAGTGGAGAAGGCGTACGCCCAGTTGCGCTCCACT
CGCCAGGTGACTGCATCTGGTTCAGCTTCGGCCAAGAGCGGCGCTTCTCA
GGATGAGTATGTGACCCTGCAGCCAAAGCCCGCCAAGAAGCAGCCGAGTG
CCCAAGCCCATTTGCACCAGTCACAGCCAGCGGCCAGGCGCCTCTCCAAC
GTGTCCTACATCACCAACGGCCACAATGGCCAGCATCTGCATCCGAAGCT
CGTGCCCCTGCCACCCTACGAGCACAAGCCGGCCAAGAACCAGGCGGAGG
CAGACGCCACCCTAAAGGCGCTGCGGCGCCAGCAGGAGGTGGGCCAGCGA
CAAACTCTAGTCGCCATCAACACGGACTACATCACGGAGAGCATCGCGGT
GCACAAGGGTGAGATTGTCACGCTGTGCGAGTGCCGCGAGTCCAAGGATC
AGCGCCAGTGGTTCTACGTGCGGACGAGGGACGGACGCGAAGGCTTCATT
CCGGCCGAGGTGGCCGGCCATGGCTACCTGTAGAAGCTTTCTAGACCATT
CGTTTGGGGCGCGAAACGGGG
BS27995.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7991-RB | 2667 | CG7991-PB | 1..2667 | 17..2683 | 13335 | 100 | Plus |
| CG7991-RC | 1827 | CG7991-PC | 1..1827 | 857..2683 | 9135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7991-RB | 3727 | CG7991-RB | 414..3081 | 17..2684 | 13340 | 100 | Plus |
| CG7991-RC | 4073 | CG7991-RC | 806..3427 | 63..2684 | 13110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1712840..1714895 | 629..2684 | 10280 | 100 | Plus |
| 3L | 28110227 | 3L | 1712273..1712783 | 119..629 | 2555 | 100 | Plus |
| 3L | 28110227 | 3L | 1698647..1698703 | 63..119 | 285 | 100 | Plus |
| 3L | 28110227 | 3L | 1675122..1675169 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 14:02:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2473 | 2023..2124 | 145 | 62.5 | Plus |
BS27995.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:43 Download gff for
BS27995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7991-RB | 419..3084 | 22..2688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:00 Download gff for
BS27995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7991-RB | 419..3084 | 22..2688 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:00 Download gff for
BS27995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1712274..1712783 | 120..629 | 100 | -> | Plus |
| 3L | 1698642..1698703 | 58..119 | 96 | -> | Plus |
| 3L | 1712841..1714898 | 630..2688 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:43 Download gff for
BS27995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1698642..1698703 | 58..119 | 96 | -> | Plus |
| arm_3L | 1712274..1712783 | 120..629 | 100 | -> | Plus |
| arm_3L | 1712841..1714898 | 630..2688 | 99 | | Plus |
BS27995.pep Sequence
Translation from 16 to 2682
> BS27995.pep
MLFWKRRLQRSSSSSSAIQERRFFGILRSAKRKDAATSLPTYRHNGDNVS
ITTAPPADRLPLGYEGAGTIELQAQENDYVLEESALRVPLSPPPNYSPHP
LTPPPSYTERPRSVQEHRSHLAEALHPAAPARVVIFPPVGANTAASEQAA
RQQARRRRRLRELQQQQLRFASSTDSSSSSGSSCSELGSDSASRRQRRRR
RGLRDAYCPDLLNACSLILQNPGSSDSSVGNFTATPPPPVRAPGHRDQEE
SFEYSSDYVEIDELLPLVAGGRAKSTPQLAMGQNLSLRRPRISLTWVLRE
QQQTQQAPPSQTPPSPQKEAAKESDSQVLDRKENEVFPPRTEPVPTQLDV
TKKRYRVKQLPSGGEPLNGYATTPTAHQAPPNGHLANQKFFSNQNLLDVS
RSGPSSAPVAAASTKELLFVCTPQRAPRTDSHSEALLLARKRNEIRKKLA
SRLQQARSSASQAGEARGSVTGAESVKCTSYSEPSLVAASEGGGVGGSGG
GAAAPQQQRRHRHRKRRDRNRVQRFGYEIHNVDEFLSRCSLATPGNIPVV
LSTASTLYQTRPGGYQLEIPLPLGMVVNAVFKNQNWLYVQTPHAEEGYVG
YACCLPLGILPQQARAGSRNTPCWESNADVFPRPCGNMTDSEKEIRLRGG
TRSDGARTPRSSKPTEDVLKIGSTTINNNNNHSNNNNQAKCGSTTSSLYG
EQQVDKLYLRAASKPRLVEKAYAQLRSTRQVTASGSASAKSGASQDEYVT
LQPKPAKKQPSAQAHLHQSQPAARRLSNVSYITNGHNGQHLHPKLVPLPP
YEHKPAKNQAEADATLKALRRQQEVGQRQTLVAINTDYITESIAVHKGEI
VTLCECRESKDQRQWFYVRTRDGREGFIPAEVAGHGYL*
BS27995.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7991-PB | 888 | CG7991-PB | 1..888 | 1..888 | 4605 | 100 | Plus |
| CG7991-PC | 608 | CG7991-PC | 1..608 | 281..888 | 3169 | 100 | Plus |
