BS27996.complete Sequence
1088 bp assembled on 2011-09-30
GenBank Submission: KX803762
> BS27996.complete
GAAGTTATCAGTCGACATGGCGATGCAGAAGTTCTTCAGCGTGCTGCTGC
CGGATGTGAAGCGGGAGCTGCGCCGCGGGATCATCGAGTGCTCCAAGCGG
GGCCTCCTGCACAGCACCAAGTGGCTGGCGGAAATGCATCACGGACTGGC
CGATGTGCACATAGACAATGAGGCGCCTGATGAGGATCGCACATTCAGCG
AGTGTCAGCTGGAGGGGATTGCGCCGGAGGAGTACAGCGACTACTTCCTG
GCCAAGAGCTACTACGACGTGAGGGAGTACGACAGGGCGGCGCATGCGGT
CAGGAACTGCGAGTCCAGTGTTCCGCGCTTCCTGCACTTCTATTCCAGCT
ACATGGCCAGGGAAAAGCGGCGACTGGACTCGACCACGGACCAGGCGAAT
CTGCACGAACCGAATCAGATGCGCGATCTCGCCGACCTGCTGGCTACGTT
GCGCATGGAATACGGCAAAAGTCGGCTCGATGGCTACGGAATATACTTAT
ACGGAGTAGTCCTGAAAGCACTGAATCTCAACCAGGCCGCCGAGCAAATG
CTGGTCCAGGCCATCAGACTGGTACCCATGCTGTGGAGCGCCTATCTGGA
GCTCTCGCCCCTCATCATGGAGAAGAAGAAACTGCTGAGCCTGCAGCTGG
GTGGTCACTGGATGCGGCACTTCTTCATGGCGCACACTTACCTGGAGCTG
TACCTCAACGACGACGGCCTGAAGATCTACGAGGACCTGCAGGCATCGGG
TTTCAGCAAGAGCATCTACTTGATTGCCCAGATGGCTCTGGTCTATCACA
ATAAGCGGGATGTGGACAAGGCGATTGAGCTGTACCAGGCGCTTCTCGAG
AGCGCTTCTCCCTACCGCCTGGACAATGTGGACACCTATTCCAATCTGCT
GTTCGTCAAGGAGATGAAAACCGAAATGGCACAGTTGGCCCACAAGGCTG
TCAGCATCAACAAGTACCGCCCGGAGACGTGTTGTGTAATAGGCAACTAC
TACAGTATCCGCTGTGATCACCAGGTGGCCATTTCCTACTTTCAACGCGC
CCTGAAACTGAATCCCAAGTAGAAGCTTTCTAGACCAT
BS27996.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31687-RB | 1056 | CG31687-PB | 1..1056 | 17..1072 | 5280 | 100 | Plus |
| CG31687-RC | 1056 | CG31687-PC | 1..1056 | 17..1072 | 5280 | 100 | Plus |
| Cdc23-RB | 2037 | CG2508-PB | 1..1052 | 17..1071 | 5180 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31687-RB | 3653 | CG31687-RB | 77..1132 | 17..1072 | 5280 | 100 | Plus |
| CG31687-RC | 6696 | CG31687-RC | 77..1132 | 17..1072 | 5280 | 100 | Plus |
| Cdc23-RB | 2184 | CG2508-RB | 77..1128 | 17..1071 | 5180 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20450301..20451277 | 17..993 | 4885 | 100 | Plus |
| 2L | 23513712 | 2L | 20459418..20460391 | 17..993 | 4790 | 99.6 | Plus |
| 2L | 23513712 | 2L | 20451333..20451414 | 991..1072 | 410 | 100 | Plus |
| 2L | 23513712 | 2L | 20460447..20460527 | 991..1071 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:32:41 has no hits.
BS27996.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:49:33 Download gff for
BS27996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31687-RB | 95..1150 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:46 Download gff for
BS27996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31687-RC | 77..1132 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:41 Download gff for
BS27996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31687-RC | 77..1132 | 17..1072 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:41 Download gff for
BS27996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20450301..20451276 | 17..992 | 100 | -> | Plus |
| 2L | 20451335..20451414 | 993..1072 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:46 Download gff for
BS27996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20450301..20451276 | 17..992 | 100 | -> | Plus |
| arm_2L | 20451335..20451414 | 993..1072 | 100 | | Plus |
BS27996.pep Sequence
Translation from 16 to 1071
> BS27996.pep
MAMQKFFSVLLPDVKRELRRGIIECSKRGLLHSTKWLAEMHHGLADVHID
NEAPDEDRTFSECQLEGIAPEEYSDYFLAKSYYDVREYDRAAHAVRNCES
SVPRFLHFYSSYMAREKRRLDSTTDQANLHEPNQMRDLADLLATLRMEYG
KSRLDGYGIYLYGVVLKALNLNQAAEQMLVQAIRLVPMLWSAYLELSPLI
MEKKKLLSLQLGGHWMRHFFMAHTYLELYLNDDGLKIYEDLQASGFSKSI
YLIAQMALVYHNKRDVDKAIELYQALLESASPYRLDNVDTYSNLLFVKEM
KTEMAQLAHKAVSINKYRPETCCVIGNYYSIRCDHQVAISYFQRALKLNP
K*
BS27996.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31687-PB | 351 | CG31687-PB | 1..351 | 1..351 | 1829 | 100 | Plus |
| CG31687-PC | 351 | CG31687-PC | 1..351 | 1..351 | 1829 | 100 | Plus |
| Cdc23-PB | 678 | CG2508-PB | 1..350 | 1..351 | 1809 | 99.4 | Plus |
| Cdc23-PA | 678 | CG2508-PA | 1..350 | 1..351 | 1809 | 99.4 | Plus |
