BS28003.complete Sequence
500 bp assembled on 2012-04-25
GenBank Submission: KX801186
> BS28003.complete
GAAGTTATCAGTCGACATGGATATGGATTTGAATAACGACTTGGAGAAAC
GCATTTCGGATGCCTTTTGTGTGTTCGATCATCATGGCGACAAGTTCATC
GACGTTAGAGAAGTGGGCACTGTGCTGAGACTCCTGGGCTGTGTTCCCAC
CGAGGAGGAGGTGAACGAAGTAATTTCGGCTACAGAATCGGAGGAGACCA
GTGGCGAAGTGCATTTGACTAAATTTTTGCCACACGTCTCGCAACTGCTC
ATGGAAAGAAAAATGGAGCCTGCTCCGCCAGAGAAAATTCTCCAGGCCTT
TAAGATCTTGGATCCGGAGAACAAGGGCTATCTCACCAAGGAGAGCTTTG
GCAAACTGATGATGGAGGAGGGCGAGCCTTTCACCCAAGAGGAAATGGAC
GAAATGTGGCCAGTGGCCATAGACCCAATTAGCGGACACATACCCTATGA
GTTCTACCTGAATCAGCTCATGGTCTATCTGTAAAAGCTTTCTAGACCAT
BS28003.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11041-RB | 468 | CG11041-PB | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:23:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11041-RB | 537 | CG11041-RB | 28..497 | 15..484 | 2350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:23:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20146214..20146445 | 30..261 | 1160 | 100 | Plus |
2R | 25286936 | 2R | 20146501..20146713 | 262..474 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:23:24 has no hits.
BS28003.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:59 Download gff for
BS28003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11041-RB | 15..480 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:23 Download gff for
BS28003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11041-RB | 30..495 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:10 Download gff for
BS28003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11041-RB | 30..495 | 17..482 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:10 Download gff for
BS28003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20146214..20146445 | 30..261 | 100 | -> | Plus |
2R | 20146501..20146716 | 262..478 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:23 Download gff for
BS28003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16033719..16033950 | 30..261 | 100 | -> | Plus |
arm_2R | 16034006..16034221 | 262..478 | 99 | | Plus |
BS28003.pep Sequence
Translation from 16 to 483
> BS28003.pep
MDMDLNNDLEKRISDAFCVFDHHGDKFIDVREVGTVLRLLGCVPTEEEVN
EVISATESEETSGEVHLTKFLPHVSQLLMERKMEPAPPEKILQAFKILDP
ENKGYLTKESFGKLMMEEGEPFTQEEMDEMWPVAIDPISGHIPYEFYLNQ
LMVYL*
BS28003.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11041-PB | 155 | CG11041-PB | 1..155 | 1..155 | 816 | 100 | Plus |
CG9406-PA | 186 | CG9406-PA | 7..153 | 5..151 | 569 | 70.1 | Plus |
Cam-PD | 149 | CG8472-PD | 15..146 | 15..151 | 184 | 32.6 | Plus |
Cam-PC | 149 | CG8472-PC | 15..146 | 15..151 | 184 | 32.6 | Plus |
Cam-PE | 149 | CG8472-PE | 15..146 | 15..151 | 184 | 32.6 | Plus |