Clone BS28003 Report

Search the DGRC for BS28003

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:280
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG11041-RB
Protein status:BS28003.pep: gold
Sequenced Size:500

Clone Sequence Records

BS28003.complete Sequence

500 bp assembled on 2012-04-25

GenBank Submission: KX801186

> BS28003.complete
GAAGTTATCAGTCGACATGGATATGGATTTGAATAACGACTTGGAGAAAC
GCATTTCGGATGCCTTTTGTGTGTTCGATCATCATGGCGACAAGTTCATC
GACGTTAGAGAAGTGGGCACTGTGCTGAGACTCCTGGGCTGTGTTCCCAC
CGAGGAGGAGGTGAACGAAGTAATTTCGGCTACAGAATCGGAGGAGACCA
GTGGCGAAGTGCATTTGACTAAATTTTTGCCACACGTCTCGCAACTGCTC
ATGGAAAGAAAAATGGAGCCTGCTCCGCCAGAGAAAATTCTCCAGGCCTT
TAAGATCTTGGATCCGGAGAACAAGGGCTATCTCACCAAGGAGAGCTTTG
GCAAACTGATGATGGAGGAGGGCGAGCCTTTCACCCAAGAGGAAATGGAC
GAAATGTGGCCAGTGGCCATAGACCCAATTAGCGGACACATACCCTATGA
GTTCTACCTGAATCAGCTCATGGTCTATCTGTAAAAGCTTTCTAGACCAT

BS28003.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11041-RB 468 CG11041-PB 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11041-RB 537 CG11041-RB 28..497 15..484 2350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20146214..20146445 30..261 1160 100 Plus
2R 25286936 2R 20146501..20146713 262..474 1065 100 Plus
Blast to na_te.dros performed on 2014-11-28 12:23:24 has no hits.

BS28003.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:59 Download gff for BS28003.complete
Subject Subject Range Query Range Percent Splice Strand
CG11041-RB 15..480 17..482 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:23 Download gff for BS28003.complete
Subject Subject Range Query Range Percent Splice Strand
CG11041-RB 30..495 17..482 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:10 Download gff for BS28003.complete
Subject Subject Range Query Range Percent Splice Strand
CG11041-RB 30..495 17..482 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:10 Download gff for BS28003.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20146214..20146445 30..261 100 -> Plus
2R 20146501..20146716 262..478 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:23 Download gff for BS28003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16033719..16033950 30..261 100 -> Plus
arm_2R 16034006..16034221 262..478 99   Plus

BS28003.pep Sequence

Translation from 16 to 483

> BS28003.pep
MDMDLNNDLEKRISDAFCVFDHHGDKFIDVREVGTVLRLLGCVPTEEEVN
EVISATESEETSGEVHLTKFLPHVSQLLMERKMEPAPPEKILQAFKILDP
ENKGYLTKESFGKLMMEEGEPFTQEEMDEMWPVAIDPISGHIPYEFYLNQ
LMVYL*

BS28003.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11041-PB 155 CG11041-PB 1..155 1..155 816 100 Plus
CG9406-PA 186 CG9406-PA 7..153 5..151 569 70.1 Plus
Cam-PD 149 CG8472-PD 15..146 15..151 184 32.6 Plus
Cam-PC 149 CG8472-PC 15..146 15..151 184 32.6 Plus
Cam-PE 149 CG8472-PE 15..146 15..151 184 32.6 Plus