BS28027.complete Sequence
1457 bp assembled on 2011-09-30
GenBank Submission: KX804587
> BS28027.complete
GAAGTTATCAGTCGACATGCAGCGACGAGAACGGCAAGCAAGTGGCGGTG
GCCCACAAACGACAACTGCCGGTCCATCCGCTGGTAATGTGGCAAATGCC
ACCACAGCCCTAGCCGGTGGTAAAAGCTCAAGCAATAACATGTATTCCAC
CCGCCAATCTGTAAGCACCACGACCGGTGTACTTATGGTCGGACCAAATT
TTCGTGTCGGTAAAAAAATTGGCTGTGGTAATTTTGGCGAATTGCGTTTA
GGCAAAAACCTTTACAACAATGAACATGTAGCAATAAAAATGGAGCCTAT
GAAGTCAAAGGCTCCGCAACTACACTTAGAGTATAGGTTTTATAAACTAT
TAGGATCACATGCCGATAACGCCCCAGATGGCATACCACGCATTTATCAT
TTGGGCACTTGCGGTGGCCGTTACAATGCCATGGTTTTAGAGTTATTGGG
ATTATCATTAGAAGATCTCTTCAATATTTGCGCCCGTAAATTTTCACTTA
AGACTGTATTGATGATAGCGAAACAACTTCTCCACCGGATCGAATATGTT
CATAGTCGGCACTTAATATATAGGGATGTGAAACCAGAGAACTTTCTCAT
TGGCAGAACGTCAACAAAACGTGAAAAAATTATACATATAATTGATTTCG
GTTTGGCCAAAGAATACATTGATTTAGATACAAATAGGCATATACCATAT
CGGGAGCATAAATCCCTAACTGGAACGGCACGTTATATGTCAATCAACAC
GCACATGGGGCGTGAGCAGTCGCGACGCGATGATCTGGAGGCATTGGGGC
ATATGTTTATGTATTTCTTAAGGGGTTCACTGCCGTGGCAAGGCCTAAAG
GCTGATACACTCAAGGAGAGATATCAAAAAATCGGTGATACGAAACGAGC
AACGCCCATCGAGGTGCTTTGTGATGGACATCCGGAAGAGTTTGCGACAT
ATTTGCGTTATGTACGGCGGTTAGATTTTTTCGAAACTCCCGACTATGAT
TTTCTGCGAAGACTGTTTCAAGACTTATTCGATCGTAAGGGATACACCGA
CGAGGGCGAGTTCGACTGGACAGGGAAGACAATGTCAACGCCCGTCGGAT
CTCTGCAAACTGGCCATGAAGTCATCATTTCACCAAATAAAGATCGTCAT
AATGTTACGGCTAAGACAAATGCCAAAGGAGGTGTTGCTGCGTGGCCTGA
TGTGCCAAAGCCGGGGGCAACACTGGGCAATCTAACGCCGGCCGATCGGC
ATGGTTCAGTACAGGTTGTGAGTTCGACGAATGGCGAACTAAATCCGGAC
GATCCCACGGCCGGACACTCAAACACGCCCATCACACAGCAGCCGGAAGT
CGAAGTGGTCGATGAAACAAATGGTTCCTTATATTCCAGATGTTGTTGTT
TCTTTAAACGAAAGAAGAAGAAATCGACGCGCCAAAAATGAAAGCTTTCT
AGACCAT
BS28027.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gish-RI | 1425 | CG6963-PI | 1..1425 | 17..1441 | 7125 | 100 | Plus |
| gish-RM | 1407 | CG6963-PM | 1..1407 | 17..1441 | 6820 | 98.7 | Plus |
| gish-RL | 1614 | CG6963-PL | 1..1407 | 17..1441 | 6820 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gish-RI | 3245 | CG6963-RI | 1319..2747 | 13..1441 | 7130 | 99.9 | Plus |
| gish-RM | 5623 | CG6963-RM | 1319..2729 | 13..1441 | 6825 | 98.7 | Plus |
| gish-RL | 2945 | CG6963-RL | 1037..2447 | 13..1441 | 6825 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16296835..16297107 | 644..916 | 1365 | 100 | Plus |
| 3R | 32079331 | 3R | 16289629..16289840 | 41..252 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 16297173..16297345 | 912..1084 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 16293986..16294153 | 362..529 | 840 | 100 | Plus |
| 3R | 32079331 | 3R | 16296662..16296776 | 530..644 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 16292722..16292834 | 250..362 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 16301242..16301351 | 1262..1371 | 550 | 100 | Plus |
| 3R | 32079331 | 3R | 16299589..16299691 | 1164..1266 | 515 | 100 | Plus |
| 3R | 32079331 | 3R | 16298469..16298550 | 1084..1165 | 410 | 100 | Plus |
| 3R | 32079331 | 3R | 16301805..16301874 | 1372..1441 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:09:02 has no hits.
BS28027.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:09 Download gff for
BS28027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RI | 1283..2699 | 17..1433 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:24:24 Download gff for
BS28027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RI | 1323..2739 | 17..1433 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:51 Download gff for
BS28027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RI | 1323..2739 | 17..1433 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:51 Download gff for
BS28027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16293987..16294153 | 363..529 | 100 | -> | Plus |
| 3R | 16296662..16296776 | 530..644 | 100 | -> | Plus |
| 3R | 16296836..16297104 | 645..913 | 100 | -> | Plus |
| 3R | 16297175..16297345 | 914..1084 | 100 | -> | Plus |
| 3R | 16298470..16298550 | 1085..1165 | 100 | -> | Plus |
| 3R | 16299591..16299689 | 1166..1264 | 100 | -> | Plus |
| 3R | 16301245..16301351 | 1265..1371 | 100 | -> | Plus |
| 3R | 16301805..16301866 | 1372..1433 | 100 | | Plus |
| 3R | 16292724..16292834 | 252..362 | 100 | -> | Plus |
| 3R | 16275144..16275169 | 17..42 | 100 | -> | Plus |
| 3R | 16289631..16289839 | 43..251 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:24:24 Download gff for
BS28027.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12100866..12100891 | 17..42 | 100 | -> | Plus |
| arm_3R | 12115353..12115561 | 43..251 | 100 | -> | Plus |
| arm_3R | 12118446..12118556 | 252..362 | 100 | -> | Plus |
| arm_3R | 12119709..12119875 | 363..529 | 100 | -> | Plus |
| arm_3R | 12122384..12122498 | 530..644 | 100 | -> | Plus |
| arm_3R | 12122558..12122826 | 645..913 | 100 | -> | Plus |
| arm_3R | 12122897..12123067 | 914..1084 | 100 | -> | Plus |
| arm_3R | 12124192..12124272 | 1085..1165 | 100 | -> | Plus |
| arm_3R | 12125313..12125411 | 1166..1264 | 100 | -> | Plus |
| arm_3R | 12126967..12127073 | 1265..1371 | 100 | -> | Plus |
| arm_3R | 12127527..12127588 | 1372..1433 | 100 | | Plus |
BS28027.pep Sequence
Translation from 16 to 1440
> BS28027.pep
MQRRERQASGGGPQTTTAGPSAGNVANATTALAGGKSSSNNMYSTRQSVS
TTTGVLMVGPNFRVGKKIGCGNFGELRLGKNLYNNEHVAIKMEPMKSKAP
QLHLEYRFYKLLGSHADNAPDGIPRIYHLGTCGGRYNAMVLELLGLSLED
LFNICARKFSLKTVLMIAKQLLHRIEYVHSRHLIYRDVKPENFLIGRTST
KREKIIHIIDFGLAKEYIDLDTNRHIPYREHKSLTGTARYMSINTHMGRE
QSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEV
LCDGHPEEFATYLRYVRRLDFFETPDYDFLRRLFQDLFDRKGYTDEGEFD
WTGKTMSTPVGSLQTGHEVIISPNKDRHNVTAKTNAKGGVAAWPDVPKPG
ATLGNLTPADRHGSVQVVSSTNGELNPDDPTAGHSNTPITQQPEVEVVDE
TNGSLYSRCCCFFKRKKKKSTRQK*
BS28027.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gish-PI | 474 | CG6963-PI | 1..474 | 1..474 | 2516 | 100 | Plus |
| gish-PK | 496 | CG6963-PK | 1..496 | 1..474 | 2483 | 95.6 | Plus |
| gish-PM | 468 | CG6963-PM | 1..468 | 1..474 | 2465 | 98.5 | Plus |
| gish-PL | 537 | CG6963-PL | 1..468 | 1..474 | 2465 | 98.5 | Plus |
| gish-PH | 468 | CG6963-PH | 1..468 | 1..474 | 2465 | 98.5 | Plus |
