BS28066.complete Sequence
2786 bp assembled on 2013-09-16
GenBank Submission: KX805209
> BS28066.complete
GAAGTTATCAGTCGACATGATAGTCATCAATGCCTCTGACACGGGCCTTA
CCCTCACACCTGAAATGCTGTTGTCCACCTCGGAATCATCGACCCACAGT
GCCTCCGAGGTCGCCGGACGACTGCAGGTCGACGTGCGTACCGGCCTCAA
ATGGACAGAGGCCAAGTATCGTGCCAAGATCATCGGGCATAACGAGCTGC
TGCTCGTGGCGGAGGATCCGACATGGAAAAAGTACATTGAGCAGTTTAGG
AACCCGCTAATTCTGCTGCTTCTTGGTTCTGCTCTGGTGTCCGTAATCAT
GAAGCAGTTTGACGACGCCGTGAGCATAACCATTGCCATCCTAATTGTGG
TCACGGTGGCCTTTATCCAGGAGTACCGCTCCGAGAAGAGTCTGGAGGAG
CTTAAGAAGCTGGTGCCCCCTGAATGCCACTGCCTGCGGGAAGGTCGTCT
AGACACATTCCTGGCACGCGAACTGGTTCCCGGGGACATAGTGCACCTCA
ACGTGGGCGACCGGGTGCCGGCCGACGTGCGTCTTTTCGAAGCTGTGGAC
CTATCTATCGACGAGAGCAGTTTTACCGGCGAAACAGAGCCGGCGCGCAA
AATTACTGATGTTTTGCTTAACAATACGAACGTAAAGGACCACAGCAACA
TGAAGAACATTGCCTTCATGGGCACTCTGGTGCGATGTGGCAACGGGAAG
GGCATAGTTGTCAGCACTGGGGAGCGCAGTGAGTTCGGTGAGGTCTTCAA
AATGATGCAGGCAGAGGAGGCTCCGAAGACGCCACTGCAGAAGTCGATGG
ACATTCTAGGCGCTCAGTTGAGCTTCTACTCCTTCCTGATTATCGGTGTC
ATCATGCTGCTGGGCTGGCTACAAGGTAAGCCGCTTTCGGAAATGTTCAA
TATCAGCGTTTCACTGGCCGTTGCGGCCATCCCCGAGGGCCTTCCTATCG
TGGTAACTGTGACTCTAGCGCTTGGCGTAATGCGGATGGCTAAACGAAAT
TCAATCGTTAAAAAGCTGCCTACTGTTGAGACTTTGGGCTGCGTTAACGT
TATCTGCTCTGATAAGACCGGAACTTTGACCAAGAACGAGATGACGGCCA
CGATCATCATCACTTCCGACGGATACATGGCGGACGTTACCGGTGCCGGT
TACAATGATCAGGGTGAAATCCACATACGGCATTGCAACAACGTGGAGAT
GGCTAAGACCAATATTACAAACCTCCTTGAAATCGGGGCGGTCTGCAATA
ACGCTTACATACAAAATGGCACCCTCCTAGGACAACCCACTGAAGGAGCC
CTTGTGGCGGTAGCCATGAAGAACGGAATGTACGCCACAGCTGAGAACTA
CGTTCGCATCCAGGAGTATCCCTTCAGCTCGGAGCAGAAGATGATGGCTG
TAAAGTGCATCCACAAGTACAACAACAACAAGGAAGAGATTTTCTTCGCC
AAGGGGGCTCTAGAGACCCTGTTACCGCAGTGCACCAAGTATCAGTTTGG
TACCCAGACGGTACCACTTACCAAGCAGAACGAGGCAGAGTTCCTAGCCG
AGGCGTACGAGATCGGGCGCAAGGGCCTTCGCGTGTTGGCCCTGGCAAAG
GGCCGGTCCATGCAAGATCTGATCTACTGCGGCCTAGTCGGCATCACTGA
CCCACCAAGGCCCCTTGTTCGAGAGTCTATTGAAATGTTGATGCAGAGCG
GAGTGCGTGTTAAAATGGTGACTGGAGATGCCCAGGAAACGGCCTTGGCC
ATTGCGAATCTCATCGGTATCGATACAATCCATCACCAGACGCTTTCCGG
TCAGGAAATGGATCAAATGAACGAGCACCAACTGGACAAGGTAGCCAACA
ACGTGAGCGTATTCTACCGCGTATCGCCACGCCACAAACTGGAGATAGTC
AAGTCCTTGCAGCGCAGTGGCAACATAGTCGGCATGACGGGCGACGGGGT
GAACGACGGAGTGGCCCTGAAGAAGGCGGACATCGGCATAGCCATGGGAA
AGAACGGGACAGATGTGTGTAAGGAGGCGGCTGATATGATCCTGGTCAAT
GATGATTTCCACACCATAATCGCCGCCATCGAGGAGGGCAAGGGCATATT
CTACAACATTCGAAACTTCGTGCGCTTTCAGCTTAGCACATCAATAGCTG
CCCTGGCCCTGATTGCCCTGGCCACTCTGATGGACATTGCTAACCCGCTA
AATGCCATGCAGATTTTGTGGATCAACATCATAATGGACGGTCCGCCCGC
ACAGTCTCTGGGCGTGGAGCCCGTCGACCACGATGTGCTCAAACAGAAAC
CACGGAACGTGAAACAGCCAATGATCACAAAGTCAGTGGTGGTGAACGTT
CTGCTTAGTGCCAGTATAATTGTACTGGGCACGCTGTGGGTGTTCCAGCG
CGAAATGGCCGACGGGACGCTGGGAAAGACCAAACGGGACACAACGATGA
CCTTTACTTGTTTCGTGTTTTTCGACATGTTTAACGCCCTGTCTTGCCGC
TCGCAGACAAAGAGTGTCTTTACCATCGGACTCACTACCAATCGAATGTT
CTTGCTGGCCGTCGCTTTTTCGATCATTGGTCAAATGCTCGTTGTCTACT
TTCCGCCGCTGCAAATGGTTTTCCAGACGGAAGCTCTTACGCCGTATGAC
ATATTCTTCCTGGTCTCCCTAACCTCATCTGTGCTGGTTGTTTCAGAGAT
AAAGAAATGGTTCGAGCGTACCATGGAGCGCAAGATGTACAGCACCCGCT
CCGAGCTGGATTTTGTATGAAAGCTTTCTAGACCAT
BS28066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SPoCk-RF | 2754 | CG32451-PF | 1..2754 | 17..2770 | 13770 | 100 | Plus |
| SPoCk-RE | 2754 | CG32451-PE | 1..2754 | 17..2770 | 13770 | 100 | Plus |
| SPoCk-RD | 2994 | CG32451-PD | 265..2994 | 41..2770 | 13650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SPoCk-RF | 4059 | CG50-RF | 558..3311 | 17..2770 | 13770 | 100 | Plus |
| SPoCk-RE | 4245 | CG32451-RE | 744..3497 | 17..2770 | 13770 | 100 | Plus |
| SPoCk-RA | 3659 | CG32451-RA | 181..2911 | 40..2770 | 13655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22777111..22778824 | 41..1754 | 8570 | 100 | Plus |
| 3L | 28110227 | 3L | 22783788..22784487 | 2071..2770 | 3500 | 100 | Plus |
| 3L | 28110227 | 3L | 22783419..22783735 | 1754..2070 | 1585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:04:55 has no hits.
BS28066.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:35 Download gff for
BS28066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPoCk-RE | 744..3496 | 17..2769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:51 Download gff for
BS28066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPoCk-RE | 744..3496 | 17..2769 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:51 Download gff for
BS28066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22775114..22775137 | 17..40 | 100 | -> | Plus |
| 3L | 22777111..22778824 | 41..1754 | 100 | -> | Plus |
| 3L | 22783420..22783735 | 1755..2070 | 100 | -> | Plus |
| 3L | 22783788..22784486 | 2071..2769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:35 Download gff for
BS28066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22768214..22768237 | 17..40 | 100 | -> | Plus |
| arm_3L | 22770211..22771924 | 41..1754 | 100 | -> | Plus |
| arm_3L | 22776520..22776835 | 1755..2070 | 100 | -> | Plus |
| arm_3L | 22776888..22777586 | 2071..2769 | 100 | | Plus |
BS28066.pep Sequence
Translation from 16 to 2769
> BS28066.pep
MIVINASDTGLTLTPEMLLSTSESSTHSASEVAGRLQVDVRTGLKWTEAK
YRAKIIGHNELLLVAEDPTWKKYIEQFRNPLILLLLGSALVSVIMKQFDD
AVSITIAILIVVTVAFIQEYRSEKSLEELKKLVPPECHCLREGRLDTFLA
RELVPGDIVHLNVGDRVPADVRLFEAVDLSIDESSFTGETEPARKITDVL
LNNTNVKDHSNMKNIAFMGTLVRCGNGKGIVVSTGERSEFGEVFKMMQAE
EAPKTPLQKSMDILGAQLSFYSFLIIGVIMLLGWLQGKPLSEMFNISVSL
AVAAIPEGLPIVVTVTLALGVMRMAKRNSIVKKLPTVETLGCVNVICSDK
TGTLTKNEMTATIIITSDGYMADVTGAGYNDQGEIHIRHCNNVEMAKTNI
TNLLEIGAVCNNAYIQNGTLLGQPTEGALVAVAMKNGMYATAENYVRIQE
YPFSSEQKMMAVKCIHKYNNNKEEIFFAKGALETLLPQCTKYQFGTQTVP
LTKQNEAEFLAEAYEIGRKGLRVLALAKGRSMQDLIYCGLVGITDPPRPL
VRESIEMLMQSGVRVKMVTGDAQETALAIANLIGIDTIHHQTLSGQEMDQ
MNEHQLDKVANNVSVFYRVSPRHKLEIVKSLQRSGNIVGMTGDGVNDGVA
LKKADIGIAMGKNGTDVCKEAADMILVNDDFHTIIAAIEEGKGIFYNIRN
FVRFQLSTSIAALALIALATLMDIANPLNAMQILWINIIMDGPPAQSLGV
EPVDHDVLKQKPRNVKQPMITKSVVVNVLLSASIIVLGTLWVFQREMADG
TLGKTKRDTTMTFTCFVFFDMFNALSCRSQTKSVFTIGLTTNRMFLLAVA
FSIIGQMLVVYFPPLQMVFQTEALTPYDIFFLVSLTSSVLVVSEIKKWFE
RTMERKMYSTRSELDFV*
BS28066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SPoCk-PF | 917 | CG32451-PF | 1..917 | 1..917 | 4631 | 100 | Plus |
| SPoCk-PE | 917 | CG32451-PE | 1..917 | 1..917 | 4631 | 100 | Plus |
| SPoCk-PD | 997 | CG32451-PD | 85..997 | 5..917 | 4600 | 99.7 | Plus |
| SPoCk-PB | 1034 | CG32451-PB | 125..1034 | 8..917 | 4596 | 99.9 | Plus |
| SPoCk-PC | 924 | CG32451-PC | 16..924 | 9..917 | 4594 | 100 | Plus |
