BS28087.complete Sequence
2381 bp assembled on 2011-11-21
GenBank Submission: KX801308
> BS28087.complete
GAAGTTATCAGTCGACATGGCCGAAGCCCATGCCGCCGTGGCATTCTCGT
TTGCCATCACCCATGAGGGCTTCGACATCAACTATGACCACGAGGTGCTC
AATTTGGTGTGGAACTCAGGAGTTCGTTCCTGGAAAAAGCGATTGGCTCG
CGCAAGGAACGGCGTACGCAATGGCGTCTATCCGGCTCACATCCAGAGCC
TCTGGTTGATCTCAGCAATAGCGCTGGGTCTACACTTTGCGGGCTACCAG
GCTCCATTCAATCTGACCAACCGTATACTGGTGCACCTGCCTTCCAACAC
GATAAACTGGCAGGTTACCGCCTGCTTTTTGGCCGCTCTGGTGGTCTGGC
TATCGATCTGTTTCACCATGAGATACACTCTCAAGCTGCTGCTCATGTAC
AAGGGCTGGATGTACGAGTCCAGAGCTCCCGGTAGTCGTGTCTCTCTGCC
CACCATGTTGTGGGTGGCAGTGGTGCGGGTTCTATCTAGTTGGAACAAAC
CGGGTCTGTACAGCTTCCAGGGTTCTCTGCCCAGGCTGCCACTGCCCTCC
GTTAAAGACACGATGACCAGGTACTTGCGCAGTGTTCGACCGCTGCTTGA
TGATGAGAACTACACGCGCATGGAGCGCCTGGCCAAAGAATTCGAACAGA
CCATCGGCAAGAAGCTGCAGTGGTACCTCATCCTCAAGAGCTGGTGGTCC
ACCAACTACGTGTCGGATTGGTGGGAGGAGTACGTCTACCTTCGTGGTCG
CAGTCCCCTCTGCGTGAACAGCAACTTCTACGGCACGGATGCGATCTTCA
TGAACCTCACCGACAAACAGGCGGCGCGTGCGGCCAATGTGATTTCCCTG
CTTCTCAACTTCCGTCGACTTATCGAGCACCAGGAACTGCAGCCTATCAT
GGTTCAGGGCATGATTCCTCTGTGCTCCTGGCAGTATGAACGTACCTTCA
ACACAGCACGCGTGCCAGGCCTGGAAACCGATCGTATCATCCACTACAGG
GACTCCAATCACATTGTGGTTCTCCACAAGGGCTGCTACTACAAGATGCT
CATCTACTACAAGGGTCGCATCCTGCGCCCATGCGAATTGCAAGTGCAAA
TTGAGGAAATCCTGAAGGGCAAAGCAACTCCCGTGGAAGGTGAGGAGCAC
TTGGCTGCCCTGACCGCCTGGAATCGCTCCAAGTGGGCGGAAGCTCGCAA
CACATTCTTCTCGTGGGGAGTCAATCAAACCTCTCTGCGCACCATCGAGT
CGGCCGCTTTTGTGCTCTCCCTGGATGATGAGCCCTTCGAGTTCGATTTG
GCGCGACCGGAATTGCTGGACAACTTTGGCAAGAAGCTGCTGCACGGCAA
TGGCTACAACCGCTGGTTTGACAAGTGTTTCACTGTCTGTGTGGGCACCA
ATGGTCGCGTTGGCTTCAATGCCGAACACACCTGGTCCGACGCTGCCATC
GCGTCACACATGTGGGAGAACCTGATCGTCGATGATCTTGTATCGGACGG
ATATGACGAAACGGGTAATACAAAGGGCACCCCGGCGTTCCAGCCACCCA
CGCCCACTAGGCTCACTTGGGATCTTAAACCATGCCTGGCGCAGATCGAA
GAGGCCACCATCGATGTGACGAAGCTTATCAACGAGGTCAATCTGCGCAT
CCTGGTGCACCAGGATTACGGCAAGGGCTTTATGAAGAAGTGCCGCATCT
CACCAGATGCCTACATACAAATGGCCCTGCAGTTGGCCTACTACCGAGAT
GCCGGTCGCTTCTCGTTGACATATGAGGCTTCAATGACCCGTCTGTTCCG
CGAAGGAAGAACTGAGACAGTGCGTCCGTGCACCATTGAGTCATCCGCCT
GGGTCAAGGCCATGCAGAACCCAAATACAACCAACGATGAGCGTGTGAAG
ATGATGCAGGCTGCCTGCGATCGTCACCAGTTGGGCTACCAGGATGCCAT
GTGCGGTCGTGGCATCGACAGGCATCTGTTCTGCCTGTATGTGGTCTCCA
AGTACCTGGAGGTGGATTCACCCTTCCTCAACGAGGTGCTCAGCGAACCC
TGGCGCCTCTCTACTAGTCAGACTCCGCACGGCCAGACGCCCAAGATGGA
CCTGAAGAAGCATCCGAACTGCATCAGCGCTGGAGGCGGCTTTGGGCCCG
TGGCCGATGATGGTTACGGTGTGTCGTACATTATTGCCGGAGAGAACCTG
ATATTCTTCCATATCTCAGCGAAGACTACGTGCCAGCAAACGGATGTGCA
CCGCTTCGCTCAGAACATATCGCAGGCTCTGTCAGACATTCGCAGCATGT
TCGAGCAGCACATGAAGGACCATCCGAAGCCCGCCAAATCACTCACAAAC
GGCAAATCCACATAAAAGCTTTCTAGACCAT
BS28087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-RC | 2349 | CG12891-PC | 1..2349 | 17..2365 | 11745 | 100 | Plus |
| whd-RD | 2349 | CG12891-PD | 1..2349 | 17..2365 | 11745 | 100 | Plus |
| whd-RA | 2343 | CG12891-PA | 1..2343 | 17..2365 | 11275 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-RC | 2888 | CG12891-RC | 250..2598 | 17..2365 | 11745 | 100 | Plus |
| whd-RD | 2907 | CG12891-RD | 269..2617 | 17..2365 | 11745 | 100 | Plus |
| whd-RA | 2882 | CG12891-RA | 250..2592 | 17..2365 | 11275 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10472475..10473213 | 895..157 | 3695 | 100 | Minus |
| 2R | 25286936 | 2R | 10470368..10470750 | 1882..1500 | 1915 | 100 | Minus |
| 2R | 25286936 | 2R | 10469945..10470305 | 2243..1883 | 1805 | 100 | Minus |
| 2R | 25286936 | 2R | 10471616..10471956 | 1436..1096 | 1705 | 100 | Minus |
| 2R | 25286936 | 2R | 10472015..10472215 | 1096..896 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 10473269..10473409 | 157..17 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 10469763..10469886 | 2365..2242 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 10471440..10471506 | 1500..1434 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:52:47 has no hits.
BS28087.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-21 10:20:07 Download gff for
BS28087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RC | 251..2597 | 17..2363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:42 Download gff for
BS28087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RD | 269..2615 | 17..2363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:49 Download gff for
BS28087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RD | 269..2615 | 17..2363 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:49 Download gff for
BS28087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10473269..10473409 | 17..157 | 100 | | Minus |
| 2R | 10469765..10469885 | 2243..2363 | 100 | <- | Minus |
| 2R | 10469946..10470305 | 1883..2242 | 100 | <- | Minus |
| 2R | 10470368..10470749 | 1501..1882 | 100 | <- | Minus |
| 2R | 10471440..10471505 | 1435..1500 | 100 | <- | Minus |
| 2R | 10471618..10471956 | 1096..1434 | 100 | <- | Minus |
| 2R | 10472016..10472215 | 896..1095 | 100 | <- | Minus |
| 2R | 10472475..10473212 | 158..895 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:42 Download gff for
BS28087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6357270..6357390 | 2243..2363 | 100 | <- | Minus |
| arm_2R | 6359521..6359720 | 896..1095 | 100 | <- | Minus |
| arm_2R | 6357451..6357810 | 1883..2242 | 100 | <- | Minus |
| arm_2R | 6357873..6358254 | 1501..1882 | 100 | <- | Minus |
| arm_2R | 6358945..6359010 | 1435..1500 | 100 | <- | Minus |
| arm_2R | 6359123..6359461 | 1096..1434 | 100 | <- | Minus |
| arm_2R | 6359980..6360717 | 158..895 | 100 | <- | Minus |
| arm_2R | 6360774..6360914 | 17..157 | 100 | | Minus |
BS28087.pep Sequence
Translation from 16 to 2364
> BS28087.pep
MAEAHAAVAFSFAITHEGFDINYDHEVLNLVWNSGVRSWKKRLARARNGV
RNGVYPAHIQSLWLISAIALGLHFAGYQAPFNLTNRILVHLPSNTINWQV
TACFLAALVVWLSICFTMRYTLKLLLMYKGWMYESRAPGSRVSLPTMLWV
AVVRVLSSWNKPGLYSFQGSLPRLPLPSVKDTMTRYLRSVRPLLDDENYT
RMERLAKEFEQTIGKKLQWYLILKSWWSTNYVSDWWEEYVYLRGRSPLCV
NSNFYGTDAIFMNLTDKQAARAANVISLLLNFRRLIEHQELQPIMVQGMI
PLCSWQYERTFNTARVPGLETDRIIHYRDSNHIVVLHKGCYYKMLIYYKG
RILRPCELQVQIEEILKGKATPVEGEEHLAALTAWNRSKWAEARNTFFSW
GVNQTSLRTIESAAFVLSLDDEPFEFDLARPELLDNFGKKLLHGNGYNRW
FDKCFTVCVGTNGRVGFNAEHTWSDAAIASHMWENLIVDDLVSDGYDETG
NTKGTPAFQPPTPTRLTWDLKPCLAQIEEATIDVTKLINEVNLRILVHQD
YGKGFMKKCRISPDAYIQMALQLAYYRDAGRFSLTYEASMTRLFREGRTE
TVRPCTIESSAWVKAMQNPNTTNDERVKMMQAACDRHQLGYQDAMCGRGI
DRHLFCLYVVSKYLEVDSPFLNEVLSEPWRLSTSQTPHGQTPKMDLKKHP
NCISAGGGFGPVADDGYGVSYIIAGENLIFFHISAKTTCQQTDVHRFAQN
ISQALSDIRSMFEQHMKDHPKPAKSLTNGKST*
BS28087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-PC | 782 | CG12891-PC | 1..782 | 1..782 | 4192 | 100 | Plus |
| whd-PD | 782 | CG12891-PD | 1..782 | 1..782 | 4192 | 100 | Plus |
| whd-PA | 780 | CG12891-PA | 1..780 | 1..782 | 4120 | 98.2 | Plus |
| whd-PB | 780 | CG12891-PB | 1..780 | 1..782 | 4120 | 98.2 | Plus |
| CG1041-PE | 638 | CG1041-PE | 47..630 | 168..765 | 643 | 31.3 | Plus |
