BS28089.complete Sequence
1073 bp assembled on 2011-09-30
GenBank Submission: KX805615
> BS28089.complete
GAAGTTATCAGTCGACATGATGCACAGCGCGAAGAACGTGTGCCGGACTT
GTATGGACGAGACCGGCACCCTGGTAGATATATTCGCCAATGTAAGGGAT
CCTGTGCTCGACGAACCGGAGATGAGCCTCTCGCACATCCTGGCCAGGTG
TACCGAACGTCCAGTGAAACGCGGCGACCTGCTGCCGCAGTTCATATGCG
TTTCCTGCGTCCTGGCCGTGCAGAATGCTTTCCGGTTCAAGTGGCAAAGC
GAGCAGAGCTACCAGCACTTCTTCCGCGTCCTAAACCAGTCGGGTGCTCC
GGAAAACCAAGTGCACTTAGCTGCATGTAATGGGGATAAGAACCAGATAA
TAAACCAGAAAATGCAGCTCAAAAGCGATCGTCAACAGGATACGCAGCAA
ATGACAAAAACGCAGAAACCAGATGATGATCTTAGTCAAAAACAAACACT
CCAAGCGAAGCTCCAAGAGGGAAATATTGATGGCCCACCGGAGTCCTTCA
CCCTGCATCCTCGTAAGCGGACTTGTCGCACAGAAGAACAGGCAGACATG
ATCCCAAAGGAAGCTACAAGAAGTACCAAAATGATCTGCGATGCCGATGG
CTACTACAACTGCCCGCACTGTTCTAAGCGATTTTGTTCCCAGACCCAGT
TAAGGACCCACATCACCGATCTGTGCAACAGGTGTCCCTACTGCCCACGC
ACTTATATGCAAAAATCGAACCTCAAGCGGCATTTGCGAAACCACCTAAG
CAAGCCAGCGCACAAGTGTTTCCACTGCTCGAAGGCTTTCATGCGTAAAG
ATCACCTTAAAAGGCACCTGCGCACCCACGACAGTGACGGTCCGCTCTCC
TGCAGCCAGTGCTCAGCGGTATTTATCGAACACGTTCAGCTGGAAATCCA
TCGCAGAGAGCACAAACAAAGGCCGGGCTCTTCAAAATCGGAGTCCACGA
AGGATCCTGACTCGGACGACAGCGATCAAGCGCAGGATCTAAAACCAAAG
TGGACTAAGAACACCTTCAATGGCACGTGCAGCATTCCACCTATGCTAAA
GCCGTGAAAGCTTTCTAGACCAT
BS28089.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2678-RB | 1041 | CG2678-PB | 1..1041 | 17..1057 | 5205 | 100 | Plus |
| CG2678-RA | 1305 | CG2678-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2678-RB | 2003 | CG2678-RB | 234..1274 | 17..1057 | 5205 | 100 | Plus |
| CG2678-RA | 1811 | CG2678-RA | 234..1271 | 17..1054 | 5190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7914084..7914637 | 17..570 | 2770 | 100 | Plus |
| 3R | 32079331 | 3R | 7914790..7915278 | 569..1057 | 2445 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 11:01:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 7063..7127 | 384..448 | 109 | 63.1 | Plus |
BS28089.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:07 Download gff for
BS28089.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2678-RB | 228..1267 | 17..1056 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:01:22 Download gff for
BS28089.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2678-RB | 234..1273 | 17..1056 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:45 Download gff for
BS28089.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2678-RB | 234..1273 | 17..1056 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:45 Download gff for
BS28089.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7914084..7914637 | 17..570 | 100 | -> | Plus |
| 3R | 7914792..7915277 | 571..1056 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:01:22 Download gff for
BS28089.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3739806..3740359 | 17..570 | 100 | -> | Plus |
| arm_3R | 3740514..3740999 | 571..1056 | 100 | | Plus |
BS28089.pep Sequence
Translation from 16 to 1056
> BS28089.pep
MMHSAKNVCRTCMDETGTLVDIFANVRDPVLDEPEMSLSHILARCTERPV
KRGDLLPQFICVSCVLAVQNAFRFKWQSEQSYQHFFRVLNQSGAPENQVH
LAACNGDKNQIINQKMQLKSDRQQDTQQMTKTQKPDDDLSQKQTLQAKLQ
EGNIDGPPESFTLHPRKRTCRTEEQADMIPKEATRSTKMICDADGYYNCP
HCSKRFCSQTQLRTHITDLCNRCPYCPRTYMQKSNLKRHLRNHLSKPAHK
CFHCSKAFMRKDHLKRHLRTHDSDGPLSCSQCSAVFIEHVQLEIHRREHK
QRPGSSKSESTKDPDSDDSDQAQDLKPKWTKNTFNGTCSIPPMLKP*
BS28089.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2678-PB | 346 | CG2678-PB | 1..346 | 1..346 | 1891 | 100 | Plus |
| CG2678-PA | 434 | CG2678-PA | 1..346 | 1..346 | 1891 | 100 | Plus |
| CG15436-PA | 346 | CG15436-PA | 4..288 | 8..299 | 336 | 28.4 | Plus |
| Meics-PB | 571 | CG8474-PB | 21..368 | 9..301 | 288 | 25.4 | Plus |
| CG44002-PA | 345 | CG44002-PA | 2..306 | 6..299 | 285 | 26.5 | Plus |
| CG15436-PA | 346 | CG15436-PA | 126..245 | 197..312 | 209 | 33.3 | Plus |
