BS28101.complete Sequence
1301 bp assembled on 2012-03-06
GenBank Submission: KX800805
> BS28101.complete
GAAGTTATCAGTCGACATGGCGGAAAACGTAGATTCAGCACAATTTAATG
CGGATGAGGTGGATGCCCCAGCTTGGCTAAATGCGGAACTTATCGAGGGC
GCTCTAAGAGCTTATGAAAAGGATCCTGAATTGCATGTAACTGATTTGAA
AATTAGTCCTGCGACTCTGCAGGGAGATCATTATGCCAGCGTCATGTTCC
GAGCTGTTTCCCACTACTCCACCGCCAAGGGGAATTTCTCCAAGGCACTG
ATAGTTAAAACAATGCCGGAACAGGAAGGTCACAAAAAGGATATGCTGTC
AAATTCGCCGATATTCAAAACGGAGATCTTAATGTACAGCAAAGCTCTTC
CAGAGCTCGAGAGAATTCTCCGGGAGGCAGGGGATACTACCAAGCTCTAT
GCGCCTTGTATCTATCACAGCTTGGAACCTCATCAGGTGATGATATTCGA
GGATCTGGTGCCACAGGGGTACACCGTCATCCGAGATCGTTATCCTAATA
AAGAAGAACTTCAGAAAGCCTTCTTCAAGTTGGCAAAGTGGCATGCAGCC
AGCATGAAAGTTTTAAATGAGCGACCTGACTTTCTTAAGGAATTTAAGTA
TGGGTTATGGGGCATGCCCAACTTTCTGAACGATTCTATAGTGACAACTG
GAGTACCCTGTTTCCTGGAAATGTTAGACAAGGTTCCGGAACTCACGAAA
TATAAGCCGTATTTCGAAAAAATAAAGGATAACTACATTCAGCAGATGAG
TGCAGTCATGGAAGAATATCGCACTAATCCGAAGCCAAATAGGTACTACG
TGCTGTGTCACGGGGATTTTCATGGGCGCAACATGATGTTTAGGTATAAC
AAGGAAACAGGGTCTTTCGAGGACGTAATGCTGGTGGATTTCCAGATCAG
TAATGTTTGCCCCCTTTCCATTGACCTAATTTACTCCATCTTCATGGTAA
TGGATACGGAGGATCGTTGGGATCTTGGAAAGGAATATATCAATTATTAT
TTCTCTGTTCTGGCGGACACTCTGAAAAAAATAGGCTTCAAAGGTGAAAT
GCCAACTCAGACAGGAGTGTGGGAGCATATTCATGGCCATAAGGATTACG
AATTCTTCATGATGACCAGCTTTCTACCCCTGGTGGCTGCCATGAATACG
AAAACATTTAAAAGTATGGATTCATTTTTTGATCCGCAAACGAAACAAAA
GTCTTTCTTTTTGGATGAATACATTACGGATGTCAAGATGCTATTGCGAA
AATTCGAAGAACTGGGATATTTTAAAGATCTTTAAAAGCTTTCTAGACCA
T
BS28101.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13658-RB | 1269 | CG13658-PB | 1..1269 | 17..1285 | 6345 | 100 | Plus |
| CG31104-RA | 1263 | CG31104-PA | 148..586 | 170..608 | 590 | 75.6 | Plus |
| CG11893-RA | 1251 | CG11893-PA | 7..824 | 23..840 | 520 | 70.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13658-RB | 1334 | CG13658-RB | 12..1280 | 17..1285 | 6345 | 100 | Plus |
| CG31104-RA | 1382 | CG31104-RA | 208..646 | 170..608 | 590 | 75.6 | Plus |
| CG11893-RA | 1415 | CG11893-RA | 45..862 | 23..840 | 520 | 70.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25287485..25288039 | 17..571 | 2775 | 100 | Plus |
| 3R | 32079331 | 3R | 25288096..25288626 | 570..1100 | 2655 | 100 | Plus |
| 3R | 32079331 | 3R | 25288691..25288876 | 1100..1285 | 930 | 100 | Plus |
| 3R | 32079331 | 3R | 25285680..25285997 | 170..487 | 555 | 78.3 | Plus |
| 3R | 32079331 | 3R | 25289933..25290750 | 23..840 | 520 | 70.9 | Plus |
| 3R | 32079331 | 3R | 25283844..25284164 | 170..490 | 300 | 72.9 | Plus |
| 3R | 32079331 | 3R | 25304478..25304655 | 281..458 | 185 | 73.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:34:15 has no hits.
BS28101.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-06 15:57:05 Download gff for
BS28101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13658-RB | 12..1278 | 17..1283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:27 Download gff for
BS28101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13658-RB | 12..1278 | 17..1283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:59 Download gff for
BS28101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13658-RB | 12..1278 | 17..1283 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:59 Download gff for
BS28101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25287485..25288039 | 17..571 | 100 | -> | Plus |
| 3R | 25288098..25288626 | 572..1100 | 100 | -> | Plus |
| 3R | 25288692..25288874 | 1101..1283 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:27 Download gff for
BS28101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21113207..21113761 | 17..571 | 100 | -> | Plus |
| arm_3R | 21113820..21114348 | 572..1100 | 100 | -> | Plus |
| arm_3R | 21114414..21114596 | 1101..1283 | 100 | | Plus |
BS28101.pep Sequence
Translation from 16 to 1284
> BS28101.pep
MAENVDSAQFNADEVDAPAWLNAELIEGALRAYEKDPELHVTDLKISPAT
LQGDHYASVMFRAVSHYSTAKGNFSKALIVKTMPEQEGHKKDMLSNSPIF
KTEILMYSKALPELERILREAGDTTKLYAPCIYHSLEPHQVMIFEDLVPQ
GYTVIRDRYPNKEELQKAFFKLAKWHAASMKVLNERPDFLKEFKYGLWGM
PNFLNDSIVTTGVPCFLEMLDKVPELTKYKPYFEKIKDNYIQQMSAVMEE
YRTNPKPNRYYVLCHGDFHGRNMMFRYNKETGSFEDVMLVDFQISNVCPL
SIDLIYSIFMVMDTEDRWDLGKEYINYYFSVLADTLKKIGFKGEMPTQTG
VWEHIHGHKDYEFFMMTSFLPLVAAMNTKTFKSMDSFFDPQTKQKSFFLD
EYITDVKMLLRKFEELGYFKDL*
BS28101.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13658-PB | 422 | CG13658-PB | 1..422 | 1..422 | 2245 | 100 | Plus |
| CG11893-PA | 416 | CG11893-PA | 1..416 | 1..422 | 1500 | 64.7 | Plus |
| CG31300-PA | 422 | CG31300-PA | 1..422 | 1..422 | 1440 | 62.6 | Plus |
| CG31104-PA | 420 | CG31104-PA | 7..420 | 9..422 | 1416 | 62.3 | Plus |
| CG31436-PA | 420 | CG31436-PA | 1..416 | 1..417 | 1178 | 52 | Plus |
