BS28102.complete Sequence
1457 bp assembled on 2012-03-05
GenBank Submission: KX801282
> BS28102.complete
GAAGTTATCAGTCGACATGGACATCGATTTGAGTCTGGACGAGATTATAG
AGCGGAAGCGCGGGCAACGCGGCTATCGTCCCCTCGACAGAAAGTTCAAT
GCGAACTTCTCCAAGCCGCGCCAGCTGCTGAACAAGCCTTTTTTCAAGCC
ATCGGGTGCCCGAGGATCTCACTCTGATACGCCGGCAAAGCGCACCTTCG
ATGCCAGAAACACGATCGCCGCGAAGACACGGGCCAAGATAGCCGATGCC
CGGGATCTGATCAACAAGAGCGTGCGCGACTCGGGCATCGATGCCCGCCA
GCTGTTGCTGGAGCGAAAGAAGGCCCGTTCGGCGGGCCCAATACTTATTG
ATGACGAAGAAGAGTCGTTTGAGCCATCACATCGCGCACGCGGAAAGGGA
GTGCACATCGGTCAGTTTGGTCACCGCCTTAGCATGTCAAACCATGCGGA
CGGCACCATTCAGGCGAAATGGGACTCGGACGACGGGGTCGTTGAACTGG
GTAACCACATGTTGTCCGGCTTGCGTCGAACCTTTGACCCCAGATCCCAT
AAGCCGGGCAAACCCTTTGCTCCACGACGCTATATTGATCTTGATAATAT
GCAGGACCTCGAGGATGAGGAAATATCTCGCACACTGCACTTAGGGCAAA
TGAAGCAAGCGTCGCCACGCTACTCAATTGGTGGGCTCGACCTGAACCGC
GGCGACGACGTGGAGATGTCCATGGCCCCACTAAATAACAAAATAGATAA
CAATGCATTCTCCATTTACGAGGCGGCCCGCAATCGCATTGAGCGTCCTT
CGCTGACCAACCGACTCGTAGTTGGACGCTCAAATACCACCAAGGAGCCT
CTCGAGCGCCGCCACCGCGACACAGCAAGCACAAGTAAACTCCCAGAATC
GCTGCGGTCTCGTCTGTTTGTCGGTAAGAGGGATCCTCACATTTCTCATG
GCATCTACGCCAACGAGAACCGGAGAAAGGCTGTTGGTGGCGGTGGTGCT
AGGGATAGCGATAGCGGTACTGATAGTGATGGTGATGCAGCTGCTCCATC
GAAGAACAAGCGCCGTTCGCCATCCCCATTGTCGCTGCGTACGTCGAACA
CAAAGGATGGATACCGCCTGCTGGTGAGCAATCTGCATACTAACGTGACT
ACTGCGGATATTCGCGAGCTTTTTAGCGACATCGGCCCAGTGTACGACGC
TCGTGTGGTGCGTCCCGGCACCGCCGAAGTTATTTACAAGTCACTGGAAC
ATGCCGAGAAGGCCGTAGATACCTATCACCATCGTCAGTTCGATGACCAG
CCCATGCACTGTGTGCTGGTTAATCCGCACTCCTCCCGTCGCTCGGTGCA
CAAAGCCAGCTCTCGCACCGTGACCACAAACTCGTCTGGCGTGGAGGTGG
ACATCGATGCACTTCACTCGGTACTCTTCAGGGTCCGCTAGAAGCTTTCT
AGACCAT
BS28102.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18259-RA | 1425 | CG18259-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
| CG6961-RA | 1425 | CG6961-PA | 1..1425 | 17..1441 | 6930 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:25:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18259-RA | 2055 | CG18259-RA | 119..1544 | 16..1441 | 7130 | 100 | Plus |
| CG6961-RA | 1894 | CG6961-RA | 150..1575 | 16..1441 | 6935 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18781914..18782656 | 1359..617 | 3715 | 100 | Minus |
| X | 23542271 | X | 18786599..18787341 | 1359..617 | 3610 | 99.1 | Minus |
| X | 23542271 | X | 18782713..18783233 | 617..97 | 2605 | 100 | Minus |
| X | 23542271 | X | 18787398..18787918 | 617..97 | 2530 | 99 | Minus |
| X | 23542271 | X | 18781776..18781859 | 1441..1358 | 420 | 100 | Minus |
| X | 23542271 | X | 18783296..18783376 | 96..16 | 405 | 100 | Minus |
| X | 23542271 | X | 18786461..18786544 | 1441..1358 | 405 | 98.8 | Minus |
| X | 23542271 | X | 18787981..18788061 | 96..16 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:25:29 has no hits.
BS28102.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:18 Download gff for
BS28102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18259-RA | 117..1541 | 17..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:35 Download gff for
BS28102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18259-RA | 120..1544 | 17..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:55 Download gff for
BS28102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18259-RA | 120..1544 | 17..1441 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:55 Download gff for
BS28102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18781776..18781857 | 1360..1441 | 100 | <- | Minus |
| X | 18781914..18782655 | 618..1359 | 100 | <- | Minus |
| X | 18782713..18783233 | 97..617 | 100 | <- | Minus |
| X | 18783296..18783375 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:35 Download gff for
BS28102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18675809..18675890 | 1360..1441 | 100 | <- | Minus |
| arm_X | 18675947..18676688 | 618..1359 | 100 | <- | Minus |
| arm_X | 18676746..18677266 | 97..617 | 100 | <- | Minus |
| arm_X | 18677329..18677408 | 17..96 | 100 | | Minus |
BS28102.pep Sequence
Translation from 16 to 1440
> BS28102.pep
MDIDLSLDEIIERKRGQRGYRPLDRKFNANFSKPRQLLNKPFFKPSGARG
SHSDTPAKRTFDARNTIAAKTRAKIADARDLINKSVRDSGIDARQLLLER
KKARSAGPILIDDEEESFEPSHRARGKGVHIGQFGHRLSMSNHADGTIQA
KWDSDDGVVELGNHMLSGLRRTFDPRSHKPGKPFAPRRYIDLDNMQDLED
EEISRTLHLGQMKQASPRYSIGGLDLNRGDDVEMSMAPLNNKIDNNAFSI
YEAARNRIERPSLTNRLVVGRSNTTKEPLERRHRDTASTSKLPESLRSRL
FVGKRDPHISHGIYANENRRKAVGGGGARDSDSGTDSDGDAAAPSKNKRR
SPSPLSLRTSNTKDGYRLLVSNLHTNVTTADIRELFSDIGPVYDARVVRP
GTAEVIYKSLEHAEKAVDTYHHRQFDDQPMHCVLVNPHSSRRSVHKASSR
TVTTNSSGVEVDIDALHSVLFRVR*
BS28102.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18259-PA | 474 | CG18259-PA | 1..474 | 1..474 | 2449 | 100 | Plus |
| CG6961-PA | 474 | CG6961-PA | 1..474 | 1..474 | 2421 | 98.7 | Plus |
