BS28103.complete Sequence
1709 bp assembled on 2012-04-11
GenBank Submission: KX806171
> BS28103.complete
GAAGTTATCAGTCGACATGAGCGAGCCCAGTGAATCCGGCGATCCCAAGC
CTCACAAGACTGCCGAGCACCAAATTGGGGATCCTCCCCAAAAAGAGGCG
GCAGCTGATTTCGAGGCAGCCATCGATGCCGCTGGCTTTGGAATGTTCAA
CATCCTCCTGCTGGTGGCCGCCGTGCCAGCGGCCATGGGCACCGTCTACG
AGACCTCCACGATGTCCTACATCCTGCCCAGCGCCGAGTGTGATCTTAAG
CTGAGCCTCCTGGACAAGGGCATCCTGAATGCCATTACCTATGCGGGCAT
GATCAGTTCGGCGGTGCTTTGGGGCTACTTGGCCGACATCAAGGGCAGAA
GAAACCTCCTGATTGTGGGCTATGCCGCCGATACGATATGCGTTTTGGGC
GGAGCACTCAGTCAAAGTAGGATCCAACTGATGGTTTTTAAATACCTTGG
AGGCTTTTGTATGAGTGGCCCCTTTGCCGTTCTTATGACCTATTTGACGG
AACTCCATGGACGGAAGCATCGACAGCGTATCATGATGATGGTGGGCATC
ATGTTCTCAATTGCAACGCTAACGCTACCGGGACTGGCCATGCTGATATT
GCCCGAGACGTGGAACATTCAGATCTGGACTTTGTCGTTAACATCCTGGC
AGTTTTTCGTCGCCGTCACCGCACTTCCCAGTCTTCTGAGCTTTGTGCTT
TTCTTTTTCTTCCCGGAGAGTCCCAAGTTTCTCATGTCCAAGGGGCGCAA
CCGGGAAGCCCTGGATGCCTTCAAGTTCATGTATCACCTGAACTCGAGAA
AACCCAAGGACTCGTTTCCAATCAAATTGCTGGCCAATGAAGTAATTGTT
CCGGTAAAAAAGCACGCGAAGGATGAAACAATTCCGACTGAGCTTAAACT
TCCGACGGAGTGCGTCGAAGTTCAGGATCCAGAGAATCAGGACTCGAAAA
AGAGCTCCCTGCGTTCGGGCTTCACGCAGCTTCGTCCCCTTTTCACCAAA
CCCTACTTGGGCCTATCCCTTTGGGTGTATCTCCTCAACTTTTGCGTGCT
CTTGGGACAAAACACCATGCGATTGTGGCTGCCACAACTGTTTGCATCCA
TCAACGAGTACGAAAACTTGATGAGCGGAGAATCACAATCGACGAGCATC
TGCAACATCTTGGAGTACAGTGTTAATCGCACCCAAAGCCAGCTGGAGGC
AGTAACTCGGAATGATCCCACGGTCGAGTGCCATGTAATTATAACACCCT
CCACCTACACCAACAATCTGATTGTGGCCGGTGCTGGCTTTGTGGCATAC
ATGCTGGCTGGGTTCCTGGTAAACTTGGTTGGCGTCAAGCTTATAATGAC
CAGTGGACTCCTCATAGCGGCCGGCTGTTCCATTGGGATGTACTGGTCCA
GCTCAGCAGCATCCACGGTCGCACTTGCTTCGCTTTTTGTGACCATGGGC
AGCATATCGGCCACATCAGTGATCAGCGCCTCAGTCAGCCTCTTTCCCAC
CTCACTCAGGACGATGATTGTCTCGCTGGAAATGATGTTCGGCCGTCTGG
GGTCTCTGTTGGGCAACATTTTCTTCCCGGCTTTGATGGGACTGGGCTGT
GTGCCGCCGTTCCTCATGATCAGTGCATTCATGCTGGCCGGGTGCTTTAT
GGCCGCATTCCTGCCGCTGAAGAACAAGGCTGCTCTCAAGTGAAAGCTTT
CTAGACCAT
BS28103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3690-RB | 1677 | CG3690-PB | 1..1677 | 17..1693 | 8370 | 99.9 | Plus |
| CG3690-RA | 1677 | CG3690-PA | 1..1677 | 17..1693 | 8370 | 99.9 | Plus |
| CG14691-RC | 1122 | CG14691-PC | 158..257 | 225..324 | 245 | 83 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3690-RB | 2540 | CG3690-RB | 19..1695 | 17..1693 | 8370 | 99.9 | Plus |
| CG3690-RA | 2073 | CG3690-RA | 19..1695 | 17..1693 | 8370 | 99.9 | Plus |
| CG14691-RC | 1675 | CG14691-RC | 230..329 | 225..324 | 245 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 951440..951882 | 459..17 | 2215 | 100 | Minus |
| X | 23542271 | X | 949958..950251 | 1349..1056 | 1470 | 100 | Minus |
| X | 23542271 | X | 950364..950599 | 1056..821 | 1180 | 100 | Minus |
| X | 23542271 | X | 950658..950837 | 820..641 | 900 | 100 | Minus |
| X | 23542271 | X | 951197..951376 | 638..459 | 900 | 100 | Minus |
| X | 23542271 | X | 949732..949892 | 1510..1350 | 805 | 100 | Minus |
| X | 23542271 | X | 949544..949673 | 1637..1508 | 650 | 100 | Minus |
| X | 23542271 | X | 949430..949486 | 1693..1637 | 285 | 100 | Minus |
| 3R | 32079331 | 3R | 10755306..10755405 | 324..225 | 245 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:31:24 has no hits.
BS28103.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:14 Download gff for
BS28103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3690-RA | 1..1676 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:39 Download gff for
BS28103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3690-RA | 19..1694 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:52 Download gff for
BS28103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3690-RA | 19..1694 | 17..1692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:52 Download gff for
BS28103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 949431..949485 | 1638..1692 | 100 | <- | Minus |
| X | 949544..949671 | 1510..1637 | 100 | <- | Minus |
| X | 949733..949892 | 1350..1509 | 100 | <- | Minus |
| X | 949958..950250 | 1057..1349 | 100 | <- | Minus |
| X | 950364..950599 | 821..1056 | 100 | <- | Minus |
| X | 950658..950839 | 639..820 | 99 | <- | Minus |
| X | 951197..951375 | 460..638 | 100 | <- | Minus |
| X | 951440..951882 | 17..459 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:39 Download gff for
BS28103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 843464..843518 | 1638..1692 | 100 | <- | Minus |
| arm_X | 843577..843704 | 1510..1637 | 100 | <- | Minus |
| arm_X | 843766..843925 | 1350..1509 | 100 | <- | Minus |
| arm_X | 843991..844283 | 1057..1349 | 100 | <- | Minus |
| arm_X | 844397..844632 | 821..1056 | 100 | <- | Minus |
| arm_X | 844691..844872 | 639..820 | 99 | <- | Minus |
| arm_X | 845230..845408 | 460..638 | 100 | <- | Minus |
| arm_X | 845473..845915 | 17..459 | 100 | | Minus |
BS28103.pep Sequence
Translation from 16 to 1692
> BS28103.pep
MSEPSESGDPKPHKTAEHQIGDPPQKEAAADFEAAIDAAGFGMFNILLLV
AAVPAAMGTVYETSTMSYILPSAECDLKLSLLDKGILNAITYAGMISSAV
LWGYLADIKGRRNLLIVGYAADTICVLGGALSQSRIQLMVFKYLGGFCMS
GPFAVLMTYLTELHGRKHRQRIMMMVGIMFSIATLTLPGLAMLILPETWN
IQIWTLSLTSWQFFVAVTALPSLLSFVLFFFFPESPKFLMSKGRNREALD
AFKFMYHLNSRKPKDSFPIKLLANEVIVPVKKHAKDETIPTELKLPTECV
EVQDPENQDSKKSSLRSGFTQLRPLFTKPYLGLSLWVYLLNFCVLLGQNT
MRLWLPQLFASINEYENLMSGESQSTSICNILEYSVNRTQSQLEAVTRND
PTVECHVIITPSTYTNNLIVAGAGFVAYMLAGFLVNLVGVKLIMTSGLLI
AAGCSIGMYWSSSAASTVALASLFVTMGSISATSVISASVSLFPTSLRTM
IVSLEMMFGRLGSLLGNIFFPALMGLGCVPPFLMISAFMLAGCFMAAFLP
LKNKAALK*
BS28103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3690-PB | 558 | CG3690-PB | 1..558 | 1..558 | 2840 | 100 | Plus |
| CG3690-PA | 558 | CG3690-PA | 1..558 | 1..558 | 2840 | 100 | Plus |
| CG31272-PA | 563 | CG31272-PA | 18..560 | 3..555 | 1288 | 46.3 | Plus |
| CG14691-PA | 522 | CG14691-PA | 13..521 | 30..557 | 1016 | 40.9 | Plus |
| CG14691-PB | 510 | CG14691-PB | 13..509 | 30..557 | 957 | 40.1 | Plus |
