BS28108.complete Sequence
3608 bp assembled on 2012-04-11
GenBank Submission: KX800947
> BS28108.complete
GAAGTTATCAGTCGACATGAGTTTTCTGGATGACAATAATGCCTGTGGGC
AGAATCTGCTGAATATAGTGTCGGTGGGTAATTCTATAATAGCAGAGATC
CTGCGCCTCAAGGACTACGTGCCCAGTATTTATAGATTGGACAACAAAGC
TGATAAGGCGAAATATGGCGAGCTTATTCTGGATTTCAGCTACTTCAAGA
TAGCCGAAGATCACGAGAGGAGGATCGAACAAAGTCCGGAACTGACCGAA
CTCGATGATGAGGCACGTGCCCAGCTTCCGCTAATCACACGATTTTACCT
GGCCTTCCAGAGCATCCATCACTATGCCTCCGATCTCCAGCAATATATCG
AGGAATTGAACACTGGCTACTATATCCAGCAGACGCTGGAGACGGTACTT
CAGGAGGAGGAGGGCCGCCAACTGCTCTGCGAATCCCTGTATCTCTTTGG
TGTGATTCTCCTCATGGTCGATTTTCACATTCCGGGGGATGTGAGAGAAC
GTCTGCTGATCGCCTACTATCGGTATAGTGGAGGAGATGCAACGCCTAGC
GGAGACGAGAGTAATATCCATGATGTTTGTCTCCTGCTCCGATCTACGGG
CTATGTTCATCCGTCGATTGCCGCTAAAGTGCTCGGTTTGGGTGGCAAAC
AGGCAGGCGCTAGAGCTGCTAGCCTTGTGGTTCCCCGATACCCGGAGGCC
TACTTCTCTCGCTTCCGTTTCGATGAGAATTTCGTGGATCTAGTGGTGGC
TCGTCTGCGGTGCGATGATATATACAACCAACTGAACCTGTATCCACATC
CTGCCCATCGCTCCACGGCTCTGTCTACTCAGGCGGCCATGCTGTATGTG
TGCTTGTATTTCTGCCCGCAAGTTCTTCATTCCCAAGGCTCACAGATGCG
CGAAATTGTGGACAAGTTCTTTTGCGACAACTGGACCATATCCGTGTACA
TGGGCATGACAGTGAATCTGGTGGATGCCTGGTTGGATTTCAAAGCCGCT
CGATCTGCTATTGAAAATGTGATAAGTCCACCGGCAATCAAAGCACTCTG
TCAGCAGCAAAAGGAGCAATTGGGCAAGATCACTCAAAAAACCCAGGAGA
TTGTTCGTGAAGGAGTTCTAAATGACAACTTTGTTTTGGAGCACGCCAAC
AAAATCATACACCTGATGAGGCAATCCAATGTCCTGCTCCGCTGGTTTTG
CCTGCACACCTCAAGGGAAGTTTTCATCTTTGCTCACACAGCTACTTTGA
CGGGTCAAGTGCAAAAATGTGTGCTCCACGAACTACAATTCAATCGGAAT
ACGCTGTATAACTTACTGCTTAACTGCAGCCAAATGGAGCTGAGCGTGAG
GGAGTTCCTGGCAGAGATTCAGCAGACTAAGGAGGAGCGCTGGACGAAAA
GCAGAGAGGAGGCCATGCAAAGGCTCAATGAGTTGAGCGAAGCCTTTGCC
GGCTCCAGGCCTTTGTCCAAGATTGAACAGAATCCTCAGTTGCAGCAATG
GTTTGGCGAAGTTGCTGGACGTCTCCAGAAACTGGAATTGAGCAGGCCCC
AAAAGTCCGGAAGGCTGATTATTCAGGTGATGCAAGCACTGGACGATGTG
CAGGAGTATCACAACCTTCATTCCAACATGCTGGTGAAGCAGCAACTACA
GGAGACGCGAGACATGCTCAATCAAATGGCACAGCTAATAAACCTGAAGG
AAGACATTGAGATTCACATCCAGATGATCACTGACTTCAGCTATGCTTGG
CATCTACTGCAGTTTGACTTCACTCCTCCCATGCAGGAACACATCAAAAG
ACAGCCACAGGCGGTAATAGGTATACGAGCGGTCTTTCTCAAGTTGGCCA
GCACCCTGGAGGTGCCGCTGATGCGGATCAATCAGGCCAGAAGCGAGGAT
CTGGTCTCTGTGTCAAACTATTACAGCACCGAGCTAGCAAACTTCCTGCG
CCGCGTTCTGCAAATTGTTCCAGAGACCATGTTCAGTATTCTGGCTAAGA
TCATCTATCTCCTTACGAATGTTATCAAGGAGTTTCCCACTAAAGTGGAG
AAGGAGCGTCTAAAGGACTATGCCCAGTTTGAGGAGCGGGCCAAGGTGGC
TCAGCTTACAAACTCCATTGCTGTTTTTACGAAGGGAATTCTTATGATGA
AAACAACTCTAGTGGGAGTAATCGAGCTGGATCCTAAACAACTATTGGAG
GATGGGATACGCAAGGAGCTTGTAAATCATCTGGCAAATGCCTACAATCT
GGGCCTAATATTTACGCCCGAGAAAGGCAAGACTCCTGTGCAGCTTCTTC
AACAAAAACTGCAAGCTCTGGCGAAAACAATAGAGGGATATCGAAGATCC
TTCGAATATATAGAGGACTACTTAAGAGTTCAGGGACTTCGAATCCTGCT
GGAGGAATCGCAACGCATTATTAACTACAATGTGGAGAAGGAATGCAATG
CCTTCCTCCGCAACAAAGTGCAGGAATTTCAATCGGAGCACCAGAGCCAG
ATCATACCCATTCCCAACTTTCCACCGCTGTTGGGAGATCCGTCTAACAA
CTTCATTGGCCGTCTGGCCCACGAAATTCTGCGGTGCACAGATCCCAAGC
AAACTATTTTTCTGGATCTAAAAAGCACTTGGTATGAGAAGAAGGCTCCT
CACCAGGAAGTTCTTGCCGGCTCTGGATTCTTTGAGATACTTAGAGAAGC
CTTGGCTCCGGCAGGAATGGTGGGATTGGAGCGCCTCTACGCTCACATGT
TGGCTGATGAGTTAAAGCGCAACTTGGAACGGTTACAGCGTAACCTGACC
TCGGATCGTATGTGGGTGGATACGTTAGCGGCACTGACTCGGGAATTGGA
GGCCCGGGACTTCCCAACTCCGGAGGTGTCCAAGCAGCCTTTGAAGTATT
ATCAAGCTTACACCCAACGATGGCTGAAAGTGTGGCCCACGCTGTTGGAT
TGGGTTTTGTGCATTGGACAGAAGCAGCTGCTCCGCAGAGAAATTGCAGG
AGAGCTAAGCTTTAGCAGTAAATGTGATGCCAAGTTGCTGGAGAACACGG
CGGACACCCTGAACAAAGCCCTTTTACTAGAACTGTCTCTCAGCAAGGAT
CTCTGTGATGAAAAGGGTGTGGTCATGTTGACAGAACTGCAGGAAACCCT
GCTCTATACGGGAAACTTTGAGCCCCTAGAGCAAGTCTTCCTTATCACAA
AGAACACCCATAACATGGCCCTCTTTATGTTTCTTTTCACCATTGCCCAT
TTGGGTCGTATGCAGCATTCCACGATTACCGATTGTCTGTTGCCAAAATC
AGCCAAAGATAACATTGATAATGTGCCTTTTATTGTGGGTCTAGTAACGA
TCTTGCAGCAGTTCCACAAGAATGTCAAGATGCTGTATATATCCTACATG
AGTCAGTACGTGGTGACTGTATCGGAGGCTCAGTTACTGGATAAAGAAAT
CCTGGGTCCCGAGGTGGTCACCGCCCTGCACTTTCTTCTAGCCTTTATAC
GCATTGCTCGTTTGCCACTCGGAGTTCTGGAGCAGCGCATTCCCAACATA
ATACTTAGCGAGTACGAGTATTTATCCACACTGCTAAAATGAAAGCTTTC
TAGACCAT
BS28108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12272-RB | 3576 | CG12272-PB | 1..3576 | 17..3592 | 17880 | 100 | Plus |
| CG12272-RA | 3576 | CG12272-PA | 1..3576 | 17..3592 | 17880 | 100 | Plus |
| CG12272-RC | 3504 | CG12272-PC | 222..3504 | 310..3592 | 16415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12272-RB | 3814 | CG12272-RB | 186..3763 | 17..3594 | 17890 | 100 | Plus |
| CG12272-RA | 3762 | CG12272-RA | 134..3711 | 17..3594 | 17890 | 100 | Plus |
| CG12272-RC | 3690 | CG12272-RC | 355..3639 | 310..3594 | 16425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16122523..16125351 | 238..3066 | 14145 | 100 | Plus |
| 3L | 28110227 | 3L | 16125407..16125784 | 3062..3439 | 1875 | 99.7 | Plus |
| 3L | 28110227 | 3L | 16125846..16126001 | 3439..3594 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 16122187..16122305 | 17..135 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 16122360..16122465 | 134..239 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:32:26 has no hits.
BS28108.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:17 Download gff for
BS28108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12272-RB | 166..3734 | 17..3585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:44 Download gff for
BS28108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12272-RA | 134..3702 | 17..3585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:13 Download gff for
BS28108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12272-RA | 134..3702 | 17..3585 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:13 Download gff for
BS28108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16122187..16122305 | 17..135 | 100 | -> | Plus |
| 3L | 16122362..16122464 | 136..238 | 100 | -> | Plus |
| 3L | 16122524..16125351 | 239..3066 | 100 | -> | Plus |
| 3L | 16125412..16125783 | 3067..3438 | 100 | -> | Plus |
| 3L | 16125846..16125992 | 3439..3585 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:44 Download gff for
BS28108.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16115287..16115405 | 17..135 | 100 | -> | Plus |
| arm_3L | 16115462..16115564 | 136..238 | 100 | -> | Plus |
| arm_3L | 16115624..16118451 | 239..3066 | 100 | -> | Plus |
| arm_3L | 16118512..16118883 | 3067..3438 | 100 | -> | Plus |
| arm_3L | 16118946..16119092 | 3439..3585 | 100 | | Plus |
BS28108.pep Sequence
Translation from 16 to 3591
> BS28108.pep
MSFLDDNNACGQNLLNIVSVGNSIIAEILRLKDYVPSIYRLDNKADKAKY
GELILDFSYFKIAEDHERRIEQSPELTELDDEARAQLPLITRFYLAFQSI
HHYASDLQQYIEELNTGYYIQQTLETVLQEEEGRQLLCESLYLFGVILLM
VDFHIPGDVRERLLIAYYRYSGGDATPSGDESNIHDVCLLLRSTGYVHPS
IAAKVLGLGGKQAGARAASLVVPRYPEAYFSRFRFDENFVDLVVARLRCD
DIYNQLNLYPHPAHRSTALSTQAAMLYVCLYFCPQVLHSQGSQMREIVDK
FFCDNWTISVYMGMTVNLVDAWLDFKAARSAIENVISPPAIKALCQQQKE
QLGKITQKTQEIVREGVLNDNFVLEHANKIIHLMRQSNVLLRWFCLHTSR
EVFIFAHTATLTGQVQKCVLHELQFNRNTLYNLLLNCSQMELSVREFLAE
IQQTKEERWTKSREEAMQRLNELSEAFAGSRPLSKIEQNPQLQQWFGEVA
GRLQKLELSRPQKSGRLIIQVMQALDDVQEYHNLHSNMLVKQQLQETRDM
LNQMAQLINLKEDIEIHIQMITDFSYAWHLLQFDFTPPMQEHIKRQPQAV
IGIRAVFLKLASTLEVPLMRINQARSEDLVSVSNYYSTELANFLRRVLQI
VPETMFSILAKIIYLLTNVIKEFPTKVEKERLKDYAQFEERAKVAQLTNS
IAVFTKGILMMKTTLVGVIELDPKQLLEDGIRKELVNHLANAYNLGLIFT
PEKGKTPVQLLQQKLQALAKTIEGYRRSFEYIEDYLRVQGLRILLEESQR
IINYNVEKECNAFLRNKVQEFQSEHQSQIIPIPNFPPLLGDPSNNFIGRL
AHEILRCTDPKQTIFLDLKSTWYEKKAPHQEVLAGSGFFEILREALAPAG
MVGLERLYAHMLADELKRNLERLQRNLTSDRMWVDTLAALTRELEARDFP
TPEVSKQPLKYYQAYTQRWLKVWPTLLDWVLCIGQKQLLRREIAGELSFS
SKCDAKLLENTADTLNKALLLELSLSKDLCDEKGVVMLTELQETLLYTGN
FEPLEQVFLITKNTHNMALFMFLFTIAHLGRMQHSTITDCLLPKSAKDNI
DNVPFIVGLVTILQQFHKNVKMLYISYMSQYVVTVSEAQLLDKEILGPEV
VTALHFLLAFIRIARLPLGVLEQRIPNIILSEYEYLSTLLK*
BS28108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12272-PB | 1191 | CG12272-PB | 1..1191 | 1..1191 | 6094 | 100 | Plus |
| CG12272-PA | 1191 | CG12272-PA | 1..1191 | 1..1191 | 6094 | 100 | Plus |
| CG12272-PC | 1167 | CG12272-PC | 1..1167 | 1..1191 | 5940 | 98 | Plus |
