BS28112.complete Sequence
395 bp assembled on 2012-03-05
GenBank Submission: KX801924
> BS28112.complete
GAAGTTATCAGTCCACATGATCAGAGTTACTACGTGCCTGTTGATGTTCG
TATTCTTTGTTTTGTACATCCATCAAAATCATGCCGACACCAAAGTGCTT
TACGAATTTCACATCAGGGAAGCCAACCAGCAGCGCGATGAAATGGGAGA
GTTCAAGGATACGTCCGAGGAATCTGACGAGGAACCCGAACTGATCATCA
CGGGCAAACGAACCTCTTCGTACGTTTTTCCCGCCAAGGATAACAACTAT
GTGTACGTGGAAACGGCCACCTATGTGGCGGATAACAATGGCTATCATGT
CAAGTACAACATCACCTTGGATACCGTGGAGCTTGACCGTCGCCTCAGCG
GACAAGCACTTAAGACCACCGCTGGTTAGAAGCTTTCTAGACCAT
BS28112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13841-RB | 363 | CG13841-PB | 1..363 | 17..379 | 1815 | 100 | Plus |
| CG13841-RA | 363 | CG13841-PA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13841-RB | 541 | CG13841-RB | 35..397 | 17..379 | 1815 | 100 | Plus |
| CG13841-RA | 835 | CG13841-RA | 35..397 | 17..379 | 1815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22767170..22767437 | 379..112 | 1340 | 100 | Minus |
| 3R | 32079331 | 3R | 22767505..22767582 | 111..34 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:25:16 has no hits.
BS28112.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:18 Download gff for
BS28112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13841-RA | 35..397 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:31 Download gff for
BS28112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13841-RA | 35..397 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:49 Download gff for
BS28112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13841-RA | 35..397 | 17..379 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:49 Download gff for
BS28112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22767170..22767437 | 112..379 | 100 | <- | Minus |
| 3R | 22767505..22767581 | 35..111 | 100 | <- | Minus |
| 3R | 22767648..22767665 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:31 Download gff for
BS28112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18592892..18593159 | 112..379 | 100 | <- | Minus |
| arm_3R | 18593227..18593303 | 35..111 | 100 | <- | Minus |
| arm_3R | 18593370..18593387 | 17..34 | 100 | | Minus |
BS28112.pep Sequence
Translation from 16 to 378
> BS28112.pep
MIRVTTCLLMFVFFVLYIHQNHADTKVLYEFHIREANQQRDEMGEFKDTS
EESDEEPELIITGKRTSSYVFPAKDNNYVYVETATYVADNNGYHVKYNIT
LDTVELDRRLSGQALKTTAG*
BS28112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13841-PB | 120 | CG13841-PB | 1..120 | 1..120 | 625 | 100 | Plus |
| CG13841-PA | 120 | CG13841-PA | 1..120 | 1..120 | 625 | 100 | Plus |
