BS28113.complete Sequence
881 bp assembled on 2012-03-05
GenBank Submission: KX805406
> BS28113.complete
GAAGTTATCAGTCGACATGTCGCTAGATTATGAGAAGATGAGCTGGTCGG
ATGTACGCGATCAGTTCAGAACATGGCGCGAGGAGACGGGTCGCCACAGC
GAGGAGGTGGTCCAGCTGTGGGTTGCTGTGCTGGAGGACAAGGTGCACAA
GACCGGCAACGAGCGGCATCTCATCCTGGAGCAGGTGATCATCGCGGCAT
TGGATACGGCTCGCTTTGACATCGCCACCAAGTGTACCAAGCAGCTGGCC
CTCGAGTTCCCGGGCAGCCTGCGCGTGATGAAGTTCAAAGCGATGCGCTA
CGAGGCCCTGGAGCAGTACGATGAGGCCGACGAGGTCCTGGATGCAATCA
TTGCTAAGGACGAGACAAATGCCGCGCCCAGGAAGCGCAAGATTGCCATC
CTTAAGGCCCGTGGTCGTCGCCTGGAGGCCATCAAGGAGCTCAACGAGTA
TCTGAAGAAGTTTATGTCTGACCAGGAGGCATGGCATGAGCTGTGCAACA
TGTATCTGGCTGAAGGCGAGTTTGGCAAAGCTGCCTTCTGCATGGAGGAG
GTTTTGCTGCACAATCCGCATAGCCATCTAATACACCAGCGTTTGGCAGA
AATACGATACACAATGGGTGGCGTCGAGAATATGGAATCGGCTCGCACTT
ACTATTCGCAGGCCCTGAAGCTTAATCCGCATAACTTGAGGGCCCTTTAT
GGCATTTACTTGTGCTGCAACCATTTGGACAACTCTCGTGCTGTGAGCTC
CAAACGGAAGGAGCTGCAAAAGTTGAGTCAATGGGCCCTCGAACAACTTT
TGACTAAACAAACGATTGTACCCTTGGAGGCTGCCTTTGGAAACCTGGAA
ATTAAATCGAATTGAAAGCTTTCTAGACCAT
BS28113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17556-RB | 849 | CG17556-PB | 1..849 | 17..865 | 4185 | 99.5 | Plus |
| CG17556-RA | 849 | CG17556-PA | 1..849 | 17..865 | 4185 | 99.5 | Plus |
| CG3678-RB | 849 | CG3678-PB | 1..849 | 17..865 | 4170 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:26:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17556-RB | 1089 | CG17556-RB | 113..961 | 17..865 | 4185 | 99.5 | Plus |
| CG17556-RA | 1230 | CG17556-RA | 113..961 | 17..865 | 4185 | 99.5 | Plus |
| CG3678-RB | 1216 | CG3678-RB | 112..960 | 17..865 | 4170 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16991182..16991593 | 461..50 | 2060 | 100 | Minus |
| 3R | 32079331 | 3R | 16995403..16995814 | 461..50 | 2000 | 99 | Minus |
| 3R | 32079331 | 3R | 16994811..16995060 | 865..616 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 16990590..16990839 | 865..616 | 1175 | 98 | Minus |
| 3R | 32079331 | 3R | 16990900..16991057 | 617..460 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 16995121..16995278 | 617..460 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:26:01 has no hits.
BS28113.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:20 Download gff for
BS28113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17556-RA | 130..977 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:48 Download gff for
BS28113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17556-RA | 113..960 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:08 Download gff for
BS28113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17556-RA | 113..960 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:08 Download gff for
BS28113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16994812..16995059 | 617..864 | 100 | <- | Minus |
| 3R | 16995122..16995278 | 460..616 | 100 | <- | Minus |
| 3R | 16995405..16995813 | 51..459 | 99 | <- | Minus |
| 3R | 16995926..16995959 | 17..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:48 Download gff for
BS28113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12820534..12820781 | 617..864 | 100 | <- | Minus |
| arm_3R | 12820844..12821000 | 460..616 | 100 | <- | Minus |
| arm_3R | 12821127..12821535 | 51..459 | 99 | <- | Minus |
| arm_3R | 12821648..12821681 | 17..50 | 100 | | Minus |
BS28113.pep Sequence
Translation from 16 to 864
> BS28113.pep
MSLDYEKMSWSDVRDQFRTWREETGRHSEEVVQLWVAVLEDKVHKTGNER
HLILEQVIIAALDTARFDIATKCTKQLALEFPGSLRVMKFKAMRYEALEQ
YDEADEVLDAIIAKDETNAAPRKRKIAILKARGRRLEAIKELNEYLKKFM
SDQEAWHELCNMYLAEGEFGKAAFCMEEVLLHNPHSHLIHQRLAEIRYTM
GGVENMESARTYYSQALKLNPHNLRALYGIYLCCNHLDNSRAVSSKRKEL
QKLSQWALEQLLTKQTIVPLEAAFGNLEIKSN*
BS28113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3678-PB | 282 | CG3678-PB | 1..282 | 1..282 | 1459 | 100 | Plus |
| CG3678-PA | 282 | CG3678-PA | 1..282 | 1..282 | 1459 | 100 | Plus |
| CG17556-PB | 282 | CG17556-PB | 1..282 | 1..282 | 1456 | 99.6 | Plus |
| CG17556-PA | 282 | CG17556-PA | 1..282 | 1..282 | 1456 | 99.6 | Plus |
