BS28114.complete Sequence
398 bp assembled on 2012-03-05
GenBank Submission: KX805305
> BS28114.complete
GAAGTTATCAGTCGACATGGGACGCATTTTCTTGGAACATCTTGGGGGTC
TGAAACTCTTCAATTGCGCCCAATGCCACACGAACCTGACCAACCGCAGT
CAATTGATCAGTACCCGATTCACAGGCGCAACAGGACGCGCCTATCTGTT
TAAGCGTGTGGTCAACCTGACCTTCAGCAACATCCAGGAACGGGTCATGC
TCACGGGTCGCCACATGGTGCGCGACGTTATGTGCAAGAATTGTGGAGCC
AAACTTGGCTGGATGTACGAGTTCGCCACCGAAGAGTCACAAAAATACAA
GGAGGGTCGCGTTATCCTGGAGTACGCCCTGATCACAGAGGCAGAGGGCT
TTCCGTCGGAGGCCGCCACCACGAGTCATTGAAAGCTTTCTAGACCAT
BS28114.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yippee-RA | 366 | CG1989-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
| Yippee-RB | 333 | CG1989-PB | 1..278 | 17..294 | 1390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yippee-RA | 1136 | CG1989-RA | 341..706 | 17..382 | 1830 | 100 | Plus |
| Yippee-RB | 1293 | CG1989-RB | 341..618 | 17..294 | 1390 | 100 | Plus |
| Yippee-RB | 1293 | CG1989-RB | 776..863 | 295..382 | 440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13386589..13386752 | 294..131 | 820 | 100 | Minus |
| X | 23542271 | X | 13386814..13386932 | 135..17 | 595 | 100 | Minus |
| X | 23542271 | X | 13386344..13386431 | 382..295 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:26:13 has no hits.
BS28114.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:21 Download gff for
BS28114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yippee-RA | 318..682 | 17..381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:50 Download gff for
BS28114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yippee-RA | 318..682 | 17..381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:12 Download gff for
BS28114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yippee-RA | 341..705 | 17..381 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:12 Download gff for
BS28114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13386589..13386748 | 135..294 | 100 | <- | Minus |
| X | 13386815..13386932 | 17..134 | 100 | | Minus |
| X | 13386345..13386431 | 295..381 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:50 Download gff for
BS28114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13280378..13280464 | 295..381 | 100 | <- | Minus |
| arm_X | 13280622..13280781 | 135..294 | 100 | <- | Minus |
| arm_X | 13280848..13280965 | 17..134 | 100 | | Minus |
BS28114.pep Sequence
Translation from 16 to 381
> BS28114.pep
MGRIFLEHLGGLKLFNCAQCHTNLTNRSQLISTRFTGATGRAYLFKRVVN
LTFSNIQERVMLTGRHMVRDVMCKNCGAKLGWMYEFATEESQKYKEGRVI
LEYALITEAEGFPSEAATTSH*
BS28114.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yippee-PA | 121 | CG1989-PA | 1..121 | 1..121 | 635 | 100 | Plus |
| Yippee-PB | 110 | CG1989-PB | 1..94 | 1..94 | 496 | 98.9 | Plus |
| CG15309-PE | 114 | CG15309-PE | 14..113 | 13..112 | 244 | 45 | Plus |
| CG15309-PD | 114 | CG15309-PD | 14..113 | 13..112 | 244 | 45 | Plus |
| CG15309-PC | 114 | CG15309-PC | 14..113 | 13..112 | 244 | 45 | Plus |
