Clone BS28117 Report

Search the DGRC for BS28117

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG15387-RA
Protein status:BS28117.pep: full length peptide match
Sequenced Size:335

Clone Sequence Records

BS28117.complete Sequence

335 bp assembled on 2012-03-05

GenBank Submission: KX802083

> BS28117.complete
GAAGTTATCAGTCGACATGGACATAATACGCTGTGTAAATCAGCCGGAAA
ACTCGAAGAAACTCTCAGAGGCAAAGGCTTCCGCTGGAAAAGAGATGATT
CTCATGATGCAGCACGTTTTTCCATTGGTGATGCAACTCCAACTGGAGGT
CATTAAGGGTCATGGGTTTCCTGGAAACCGCGAGGGATTAGTCCAGTTCT
CCCAGCTCATCAGAGAAATGGAAAGGGACGACATGGAAATCGTACGCCTG
CGCAGTCAGATCCGCGCCATATACCTGCCCCCCATAGCTATAAACACCAC
CAACGACATCCTAATCTAAAAGCTTTCTAGACCAT

BS28117.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15387-RB 351 CG15387-PB 49..351 17..319 1515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15387-RB 693 CG15387-RB 138..440 17..319 1515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2225798..2226005 319..112 1025 99.5 Minus
2L 23513712 2L 2226057..2226157 117..17 505 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:26:57 has no hits.

BS28117.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:23 Download gff for BS28117.complete
Subject Subject Range Query Range Percent Splice Strand
CG15387-RA 388..688 17..317 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:02 Download gff for BS28117.complete
Subject Subject Range Query Range Percent Splice Strand
CG15387-RB 138..438 17..317 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:26 Download gff for BS28117.complete
Subject Subject Range Query Range Percent Splice Strand
CG15387-RB 138..438 17..317 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:26 Download gff for BS28117.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2225800..2226001 116..317 100 <- Minus
2L 2226059..2226157 17..115 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:02 Download gff for BS28117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2226059..2226157 17..115 100   Minus
arm_2L 2225800..2226001 116..317 100 <- Minus

BS28117.pep Sequence

Translation from 16 to 318

> BS28117.pep
MDIIRCVNQPENSKKLSEAKASAGKEMILMMQHVFPLVMQLQLEVIKGHG
FPGNREGLVQFSQLIREMERDDMEIVRLRSQIRAIYLPPIAINTTNDILI
*

BS28117.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15387-PB 116 CG15387-PB 17..116 1..100 501 100 Plus