BS28119.complete Sequence
602 bp assembled on 2012-03-05
GenBank Submission: KX803363
> BS28119.complete
GAAGTTATCAGTCGACATGGCCGATTTCCATGAACTTATTGTGACTTGCA
TTATTTTCCTATACCAAATTATTTTGATTTTCCGATCAATCCACCCCTTC
AGAAAAGACGCTATGCTGCTTATTTTGCACAACGTTCTGCTGTACTACGT
GATCAATATGTTCAAGCATTTGGCCCAGGCATCGATTAACTCGGACGGAC
CGGTGAACACATTCTACTACGTACCATTGGTGTATGAAGAAAACATTGCC
TTGGGACGCCATCAGAGTTGGCATGAGGTCCTTAGGACATCCAGCTGGCA
ATTCTTTGAGGTCCTTTTCAGACATCATCTGGCCCTGCTGTTGCCATTTA
ATTTGGCTCTCCTGGTGCCCCGCTGCAAGTTGGCCTTCATTAGCACACTG
GTTCTCTTGTCGAACTTTGTGCTGTTCGTCTGTTTCGCCTCGGCCATTTG
TCAGCTGTTGTGGGTCCATGGCCACGCCCACAGCCTGCGCCTCCTCACAA
TCATGTGTTTGGGCCCCGTTTGCCAAGTGGTTCTGGTGTGCCGCCTCCTG
GGCCGCGTGTGGCTCAGTCAGTGGATTCTTGTTTGAAAGCTTTCTAGACC
AT
BS28119.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:16:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15278-RA | 474 | CG15278-PA | 1..474 | 113..586 | 2370 | 100 | Plus |
| CG15278-RC | 483 | CG15278-PC | 1..469 | 113..586 | 2260 | 98.9 | Plus |
| CG15278-RB | 495 | CG15278-PB | 1..451 | 113..563 | 2255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15278-RA | 981 | CG15278-RA | 113..682 | 17..586 | 2850 | 100 | Plus |
| CG15278-RC | 1714 | CG15278-RC | 113..677 | 17..586 | 2740 | 99.1 | Plus |
| CG15278-RB | 995 | CG15278-RB | 113..659 | 17..563 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:16:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14875506..14875697 | 562..371 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 14875757..14875948 | 370..179 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 14876002..14876098 | 179..83 | 485 | 100 | Minus |
| 2L | 23513712 | 2L | 14876156..14876221 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:16:34 has no hits.
BS28119.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 17:15:22 Download gff for
BS28119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15278-RA | 16..584 | 17..585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:01 Download gff for
BS28119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15278-RA | 32..600 | 17..585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:07:29 Download gff for
BS28119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15278-RA | 113..681 | 17..585 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:07:29 Download gff for
BS28119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14875414..14875436 | 563..585 | 100 | <- | Minus |
| 2L | 14875506..14875697 | 371..562 | 100 | <- | Minus |
| 2L | 14875757..14875947 | 180..370 | 100 | <- | Minus |
| 2L | 14876002..14876098 | 83..179 | 100 | <- | Minus |
| 2L | 14876156..14876221 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:01 Download gff for
BS28119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14875414..14875436 | 563..585 | 100 | <- | Minus |
| arm_2L | 14875506..14875697 | 371..562 | 100 | <- | Minus |
| arm_2L | 14875757..14875947 | 180..370 | 100 | <- | Minus |
| arm_2L | 14876002..14876098 | 83..179 | 100 | <- | Minus |
| arm_2L | 14876156..14876221 | 17..82 | 100 | | Minus |
BS28119.pep Sequence
Translation from 16 to 585
> BS28119.pep
MADFHELIVTCIIFLYQIILIFRSIHPFRKDAMLLILHNVLLYYVINMFK
HLAQASINSDGPVNTFYYVPLVYEENIALGRHQSWHEVLRTSSWQFFEVL
FRHHLALLLPFNLALLVPRCKLAFISTLVLLSNFVLFVCFASAICQLLWV
HGHAHSLRLLTIMCLGPVCQVVLVCRLLGRVWLSQWILV*
BS28119.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15278-PA | 157 | CG15278-PA | 1..157 | 33..189 | 831 | 100 | Plus |
| CG15278-PC | 160 | CG15278-PC | 1..150 | 33..182 | 795 | 100 | Plus |
| CG15278-PB | 164 | CG15278-PB | 1..150 | 33..182 | 795 | 100 | Plus |
