BS28120.complete Sequence
1736 bp assembled on 2012-04-11
GenBank Submission: KX802907
> BS28120.complete
GAAGTTATCAGTCGACATGGGGAAAGTCAGCGTGGCCGTCCAGACGGATA
TATCCGAAATGCTTTCGGCCACTTCTTCCACCAACACATCACGCTCGTCA
TCGGAGCAAGATCTGCTCGGCGCCTGGGAGGATCTACTTAGCTGGAGCGA
GAATGCCTCCGCTGCCCGCAAATTGCAGCAGGAGATGAGTGTGTTGAAGA
GCTCGCTGCAGCGCCTGGGAGACAAGCCAACTCCAGAGCTCCTCGATACG
GAGCCGGCCATCCAAATAGCAGTGGAGGCGCTCAAGTTGGAGCAGACGCA
ACTGACCAGCTATAGGACCAACATGCTGCGTCTTAACGCCTCCGTCCACA
GTTGGCTTACCAAGCAGGAGCGGCGACTGCAGAGCGCCTTGGAGGAACAG
GAGCAGCAACAGGAGTCCGAACAACTCAAGCAGCAAAAACTTGTTGAAGA
GGAGAAGGGAGCTGACGTTCAGAAGGAGCTGGCGTCTACCGGAGCAGTGG
CCATCACGGTCACCGACAGCAATGGTAATCAGGTGGAGGCACTAGCCACA
GGAGAAGCCTCCACCTCCACGCCAGCCTGGGATGTGCACACGCTGATGTC
ATCGGAGCAGGAGTTCCATAAGCATCTGAAGAACGAAGTGAGCGACATGT
ACAGTTCCTGGGATGAGGCGGATGCCAGAATCAACACGCAACTGGAAATG
CTTACCAACTCGCTTATTGCCTGGAGGCAGTTGGAGTCCGGTTTGAGTGA
GTTCCAATTGGCTTTGGGCCAAGATAGGGGCACTCTGAAGGGTCTTGAAG
GAGCTCTGGACAAGGGACAAGCCACACCAGTCGAGCTGGCCCAGAATGTA
AAACTGGTGGCCAAGCTGCTGTCCGAAAAGGTTCACGTAAGCCAGGAGCA
ACTTTTGGCCGTCCAGCAGCACCTGGACCCCAACCACATCTACCACATTA
CGAAGTTTACAGCCTCAAATGGCTCGCTATCAGATTCCGGCATCTCTGAT
GGAGGAGCTACTTCTGATGGTGGCCTGTCCGAGAGGGAGCGACGACTGGG
AGTTCTTCGACGCCTAGCAAAGCAGTTGGAACTAGCTCTGGCGCCGGGAA
GCGAAGCCATGCGTTCTATTGCTGCCCGAATGGAAAGTGCCGAGGCCGAC
CTGAAGCACCTGCAGAACACCTGTAGAGACTTAATTGTTCGCACTGCAGC
TAGCCACCAGCAGAAGCAGCAGATCCAGCAAAATCAGACCCAGCAGGTGT
CACCGAAGGCCAATGGACACATTAAGAAGCAGGCCGCAAAGGGCAAGGCA
GAACCCCAGTCGCCTGGCAGACGTGGTAAAGGAGCTCGAAAGGCGCGTCA
GGCCAAGAAGGCTGGAGAGGATCAGCAAGTAGAGGAGCCAAGTCTCAGCC
CAGAACAGCAGAAGATGGTCCTGAAGCAACTCAAGACCTTGACAAGTGGC
GATGGTGGGGACGACCCCTCTGACGATCCCTCGTTGCTCTTCAACCTGGA
AAGCTCCGAGGAAGATGGAGAGGGAGCGGATCCTGCACAGACCTCTAAGC
GAGGGTGGGCGTGGCGCATCGCGAGGGCGGCAGTGCCTATGCAGGTGGCC
CTGTTCACAATCTTCTGCGCTGCCTGCCTGATGCAACCCAACTGCTGCGA
CAATCTGAACAACCTGTCCATGAGCTTCACGCCGCAGCTCCGCTATATCC
GTGGACCACCTCCGATCTGAAAGCTTTCTAGACCAT
BS28120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| klar-RC | 1704 | CG17046-PC | 1..1704 | 17..1720 | 8520 | 100 | Plus |
| klar-RG | 3543 | CG17046-PG | 1931..3543 | 108..1720 | 8065 | 100 | Plus |
| klar-RF | 4911 | CG17046-PF | 3299..4911 | 108..1720 | 8065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| klar-RC | 3032 | CG17046-RC | 510..2213 | 17..1720 | 8520 | 100 | Plus |
| klar-RG | 4934 | CG17046-RG | 2503..4115 | 108..1720 | 8065 | 100 | Plus |
| klar-RF | 7528 | CG17046-RF | 5097..6709 | 108..1720 | 8065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 435118..436162 | 1720..676 | 5225 | 100 | Minus |
| 3L | 28110227 | 3L | 436222..436615 | 678..285 | 1970 | 100 | Minus |
| 3L | 28110227 | 3L | 436674..436851 | 286..109 | 890 | 100 | Minus |
| 3L | 28110227 | 3L | 440494..440587 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1089..1151 | 363..425 | 134 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6876 | 363..521 | 132 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2397 | 359..440 | 128 | 63.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1101 | 1196..1245 | 121 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6842 | 363..440 | 118 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2823 | 396..440 | 117 | 73.3 | Plus |
BS28120.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:19 Download gff for
BS28120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klar-RC | 493..2195 | 17..1719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:47 Download gff for
BS28120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klar-RC | 510..2212 | 17..1719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:28 Download gff for
BS28120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klar-RC | 510..2212 | 17..1719 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:28 Download gff for
BS28120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 435119..436159 | 679..1719 | 100 | <- | Minus |
| 3L | 436222..436613 | 287..678 | 100 | <- | Minus |
| 3L | 436674..436849 | 111..286 | 100 | <- | Minus |
| 3L | 440494..440587 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:47 Download gff for
BS28120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 435119..436159 | 679..1719 | 100 | <- | Minus |
| arm_3L | 436222..436613 | 287..678 | 100 | <- | Minus |
| arm_3L | 436674..436849 | 111..286 | 100 | <- | Minus |
| arm_3L | 440494..440587 | 17..110 | 100 | | Minus |
BS28120.pep Sequence
Translation from 16 to 1719
> BS28120.pep
MGKVSVAVQTDISEMLSATSSTNTSRSSSEQDLLGAWEDLLSWSENASAA
RKLQQEMSVLKSSLQRLGDKPTPELLDTEPAIQIAVEALKLEQTQLTSYR
TNMLRLNASVHSWLTKQERRLQSALEEQEQQQESEQLKQQKLVEEEKGAD
VQKELASTGAVAITVTDSNGNQVEALATGEASTSTPAWDVHTLMSSEQEF
HKHLKNEVSDMYSSWDEADARINTQLEMLTNSLIAWRQLESGLSEFQLAL
GQDRGTLKGLEGALDKGQATPVELAQNVKLVAKLLSEKVHVSQEQLLAVQ
QHLDPNHIYHITKFTASNGSLSDSGISDGGATSDGGLSERERRLGVLRRL
AKQLELALAPGSEAMRSIAARMESAEADLKHLQNTCRDLIVRTAASHQQK
QQIQQNQTQQVSPKANGHIKKQAAKGKAEPQSPGRRGKGARKARQAKKAG
EDQQVEEPSLSPEQQKMVLKQLKTLTSGDGGDDPSDDPSLLFNLESSEED
GEGADPAQTSKRGWAWRIARAAVPMQVALFTIFCAACLMQPNCCDNLNNL
SMSFTPQLRYIRGPPPI*
BS28120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| klar-PC | 567 | CG17046-PC | 1..567 | 1..567 | 2853 | 100 | Plus |
| klar-PG | 1180 | CG17046-PG | 644..1180 | 31..567 | 2712 | 99.8 | Plus |
| klar-PF | 1636 | CG17046-PF | 1100..1636 | 31..567 | 2712 | 99.8 | Plus |
| klar-PE | 2272 | CG17046-PE | 1736..2272 | 31..567 | 2712 | 99.8 | Plus |
| klar-PB | 2045 | CG17046-PB | 1509..2045 | 31..567 | 2712 | 99.8 | Plus |
