Clone BS28121 Report

Search the DGRC for BS28121

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptRFeSP-RB
Protein status:BS28121.pep: full length peptide match
Sequenced Size:725

Clone Sequence Records

BS28121.complete Sequence

725 bp assembled on 2012-03-05

GenBank Submission: KX801168

> BS28121.complete
GAAGTTATCAGTCGACATGATGAACGCCGTGTCGCGTGCTTACGTCAGAG
GCGGAGCCCAGGTCCTCTCCACGGGATTGAAGGCGAGCGGCGTGGCCGTC
AACTCGATGGCCAATCGCCAGGCACACACCGACCTGCAGGTGCCAGACTT
CTCGGCATACCGCCGGGAGTCCGTGAAGGACAGTCGTCGTCGCAACGACA
CCGCCGAGGAGCGCAAGGCCTTCTCCTACTTGATGGTCGGCGCCGGAGCC
GTGGGCGGTGCCTATGCGGCCAAGGGCCTGGTTAACACCTTCATCGGATC
GATGAGCGCCTCCGCCGAAGTGCTGGCCATGGCCAAGATCGAGATCAAGC
TGTCCGACATCCCGGAGGGCAAGTCGGTTACTTTCAAGTGGCGCGGAAAG
CCCCTGTTCATCCGCCACCGCACGGCCGCGGAAATCGAGACCGAGCGAAA
TGTGCCCACATCCACGCTGCGCGATCCGGAGGCTGATGATCAACGTGTGA
TCAAGCCCGAGTGGCTGGTGGTCATCGGAGTGTGCACGCATCTGGGCTGT
GTGCCCATCGCGAACGCCGGCGACTGGGGTGGCTACTACTGCCCCTGCCA
CGGCTCCCACTACGACGCCTCCGGAAGGATCCGCAAGGGACCCGCGCCCC
TCAACTTGGAGGTGCCCACCCACGAGTTCCCCAACGAGGGTCTTCTCGTG
GTCGGCTAGAAGCTTTCTAGACCAT

BS28121.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
RFeSP-RE 693 CG7361-PE 1..693 17..709 3465 100 Plus
RFeSP-RD 693 CG7361-PD 1..693 17..709 3465 100 Plus
RFeSP-RB 693 CG7361-PB 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
RFeSP-RE 1000 CG7361-RE 85..778 17..710 3470 100 Plus
RFeSP-RD 1118 CG7361-RD 85..778 17..710 3470 100 Plus
RFeSP-RB 851 CG7361-RB 85..778 17..710 3470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1613044..1613424 490..110 1905 100 Minus
2L 23513712 2L 1612769..1612988 710..491 1100 100 Minus
2L 23513712 2L 1613983..1614076 110..17 470 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:27:06 has no hits.

BS28121.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:23 Download gff for BS28121.complete
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 107..799 17..709 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:07 Download gff for BS28121.complete
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 85..777 17..709 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:30 Download gff for BS28121.complete
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 85..777 17..709 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:30 Download gff for BS28121.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1612770..1612988 491..709 100 <- Minus
2L 1613044..1613423 111..490 100 <- Minus
2L 1613983..1614076 17..110 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:07 Download gff for BS28121.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1612770..1612988 491..709 100 <- Minus
arm_2L 1613044..1613423 111..490 100 <- Minus
arm_2L 1613983..1614076 17..110 100   Minus

BS28121.pep Sequence

Translation from 16 to 708

> BS28121.pep
MMNAVSRAYVRGGAQVLSTGLKASGVAVNSMANRQAHTDLQVPDFSAYRR
ESVKDSRRRNDTAEERKAFSYLMVGAGAVGGAYAAKGLVNTFIGSMSASA
EVLAMAKIEIKLSDIPEGKSVTFKWRGKPLFIRHRTAAEIETERNVPTST
LRDPEADDQRVIKPEWLVVIGVCTHLGCVPIANAGDWGGYYCPCHGSHYD
ASGRIRKGPAPLNLEVPTHEFPNEGLLVVG*

BS28121.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
RFeSP-PE 230 CG7361-PE 1..230 1..230 1199 100 Plus
RFeSP-PD 230 CG7361-PD 1..230 1..230 1199 100 Plus
RFeSP-PB 230 CG7361-PB 1..230 1..230 1199 100 Plus