BS28121.complete Sequence
725 bp assembled on 2012-03-05
GenBank Submission: KX801168
> BS28121.complete
GAAGTTATCAGTCGACATGATGAACGCCGTGTCGCGTGCTTACGTCAGAG
GCGGAGCCCAGGTCCTCTCCACGGGATTGAAGGCGAGCGGCGTGGCCGTC
AACTCGATGGCCAATCGCCAGGCACACACCGACCTGCAGGTGCCAGACTT
CTCGGCATACCGCCGGGAGTCCGTGAAGGACAGTCGTCGTCGCAACGACA
CCGCCGAGGAGCGCAAGGCCTTCTCCTACTTGATGGTCGGCGCCGGAGCC
GTGGGCGGTGCCTATGCGGCCAAGGGCCTGGTTAACACCTTCATCGGATC
GATGAGCGCCTCCGCCGAAGTGCTGGCCATGGCCAAGATCGAGATCAAGC
TGTCCGACATCCCGGAGGGCAAGTCGGTTACTTTCAAGTGGCGCGGAAAG
CCCCTGTTCATCCGCCACCGCACGGCCGCGGAAATCGAGACCGAGCGAAA
TGTGCCCACATCCACGCTGCGCGATCCGGAGGCTGATGATCAACGTGTGA
TCAAGCCCGAGTGGCTGGTGGTCATCGGAGTGTGCACGCATCTGGGCTGT
GTGCCCATCGCGAACGCCGGCGACTGGGGTGGCTACTACTGCCCCTGCCA
CGGCTCCCACTACGACGCCTCCGGAAGGATCCGCAAGGGACCCGCGCCCC
TCAACTTGGAGGTGCCCACCCACGAGTTCCCCAACGAGGGTCTTCTCGTG
GTCGGCTAGAAGCTTTCTAGACCAT
BS28121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RFeSP-RE | 693 | CG7361-PE | 1..693 | 17..709 | 3465 | 100 | Plus |
RFeSP-RD | 693 | CG7361-PD | 1..693 | 17..709 | 3465 | 100 | Plus |
RFeSP-RB | 693 | CG7361-PB | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RFeSP-RE | 1000 | CG7361-RE | 85..778 | 17..710 | 3470 | 100 | Plus |
RFeSP-RD | 1118 | CG7361-RD | 85..778 | 17..710 | 3470 | 100 | Plus |
RFeSP-RB | 851 | CG7361-RB | 85..778 | 17..710 | 3470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1613044..1613424 | 490..110 | 1905 | 100 | Minus |
2L | 23513712 | 2L | 1612769..1612988 | 710..491 | 1100 | 100 | Minus |
2L | 23513712 | 2L | 1613983..1614076 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:27:06 has no hits.
BS28121.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:23 Download gff for
BS28121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RFeSP-RB | 107..799 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:07 Download gff for
BS28121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RFeSP-RB | 85..777 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:30 Download gff for
BS28121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RFeSP-RB | 85..777 | 17..709 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:30 Download gff for
BS28121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1612770..1612988 | 491..709 | 100 | <- | Minus |
2L | 1613044..1613423 | 111..490 | 100 | <- | Minus |
2L | 1613983..1614076 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:07 Download gff for
BS28121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1612770..1612988 | 491..709 | 100 | <- | Minus |
arm_2L | 1613044..1613423 | 111..490 | 100 | <- | Minus |
arm_2L | 1613983..1614076 | 17..110 | 100 | | Minus |
BS28121.pep Sequence
Translation from 16 to 708
> BS28121.pep
MMNAVSRAYVRGGAQVLSTGLKASGVAVNSMANRQAHTDLQVPDFSAYRR
ESVKDSRRRNDTAEERKAFSYLMVGAGAVGGAYAAKGLVNTFIGSMSASA
EVLAMAKIEIKLSDIPEGKSVTFKWRGKPLFIRHRTAAEIETERNVPTST
LRDPEADDQRVIKPEWLVVIGVCTHLGCVPIANAGDWGGYYCPCHGSHYD
ASGRIRKGPAPLNLEVPTHEFPNEGLLVVG*
BS28121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RFeSP-PE | 230 | CG7361-PE | 1..230 | 1..230 | 1199 | 100 | Plus |
RFeSP-PD | 230 | CG7361-PD | 1..230 | 1..230 | 1199 | 100 | Plus |
RFeSP-PB | 230 | CG7361-PB | 1..230 | 1..230 | 1199 | 100 | Plus |