Clone BS28122 Report

Search the DGRC for BS28122

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptRabX2-RA
Protein status:BS28122.pep: gold
Sequenced Size:620

Clone Sequence Records

BS28122.complete Sequence

620 bp assembled on 2012-03-05

GenBank Submission: KX800360

> BS28122.complete
GAAGTTATCAGTCGACATGAGCCACTTCGACTATCTGTTTAAGGTTCTCG
TCCTGGGTGACAGCGGCGTGGGCAAATCCTGCCTGCTAATGCGTTTCTCG
GATGACCGATTCACCGAGAAATACCTGAGAACGATGGGCATAGATGTCAA
GGCGCGCAGCGTGGAGCTGGTCAGTCGGGTGATGATGCTGCAGGTCTGGG
ATACCTCCGGCGACAAGCGCTTCAATTCGCTGATGCCGTCCAATTATCGC
AGTGCCCATGGCATACTGCTCGTCTACGACATAACGTCGTCCAAAAGTTT
CCAAAACATCGATGGCTGGATGAAGGAGATACGGCGCATGTGTCCGGATA
AGGTAACCGTCCTGCTGGTGGGCAACAAAAGTGATGATCCGAACCATCGC
CAGGTGAGCATGGAGCAGGGGTTCAACTATGCCCATCGTGGGGCACTCGG
CTTTGAAGAGGTTTCCGCCAAGAGTGGAATGAATGTATATGACATATTTA
GCTCGTTGGCAATGGACATATACCATCGTTATGTACTTCACAACCCGATC
AGCCCGATGCCATCTGAGCAGGAAGAGGAGGACGCTGCAGAGTCACCGGA
TTAAAAGCTTTCTAGACCAT

BS28122.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
RabX2-RA 588 CG2885-PA 1..588 17..604 2940 100 Plus
Rab9Db-RA 594 CG9807-PA 1..594 17..604 1680 86.6 Plus
Rab9E-RA 594 CG32673-PA 1..594 17..604 1650 86.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
RabX2-RA 791 CG2885-RA 68..655 17..604 2940 100 Plus
Rab9Db-RA 871 CG9807-RA 68..661 17..604 1680 86.6 Plus
Rab9E-RA 889 CG32673-RA 86..679 17..604 1650 86.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10417496..10418083 17..604 2940 100 Plus
X 23542271 X 10622565..10623158 604..17 1680 86.6 Minus
X 23542271 X 10661165..10661758 604..17 1650 86.3 Minus
X 23542271 X 10589182..10589775 17..604 1635 86.1 Plus
X 23542271 X 10950370..10950963 604..17 1635 86.1 Minus
X 23542271 X 10951907..10952419 529..17 1500 86.2 Minus
Blast to na_te.dros performed on 2014-11-28 08:25:52 has no hits.

BS28122.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:20 Download gff for BS28122.complete
Subject Subject Range Query Range Percent Splice Strand
RabX2-RA 12..597 17..602 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:44 Download gff for BS28122.complete
Subject Subject Range Query Range Percent Splice Strand
RabX2-RA 68..653 17..602 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:04 Download gff for BS28122.complete
Subject Subject Range Query Range Percent Splice Strand
RabX2-RA 68..653 17..602 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:04 Download gff for BS28122.complete
Subject Subject Range Query Range Percent Splice Strand
X 10417496..10418081 17..602 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:44 Download gff for BS28122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10311529..10312114 17..602 100   Plus

BS28122.pep Sequence

Translation from 16 to 603

> BS28122.pep
MSHFDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVE
LVSRVMMLQVWDTSGDKRFNSLMPSNYRSAHGILLVYDITSSKSFQNIDG
WMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSMEQGFNYAHRGALGFEEVS
AKSGMNVYDIFSSLAMDIYHRYVLHNPISPMPSEQEEEDAAESPD*

BS28122.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
RabX2-PA 195 CG2885-PA 1..195 1..195 1018 100 Plus
Rab9Db-PA 197 CG9807-PA 1..197 1..195 694 72.2 Plus
Rab9E-PA 197 CG32673-PA 1..197 1..195 691 71.7 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 1..195 691 72.2 Plus
Rab9D-PA 197 CG32678-PA 1..197 1..195 688 71.7 Plus