BS28122.complete Sequence
620 bp assembled on 2012-03-05
GenBank Submission: KX800360
> BS28122.complete
GAAGTTATCAGTCGACATGAGCCACTTCGACTATCTGTTTAAGGTTCTCG
TCCTGGGTGACAGCGGCGTGGGCAAATCCTGCCTGCTAATGCGTTTCTCG
GATGACCGATTCACCGAGAAATACCTGAGAACGATGGGCATAGATGTCAA
GGCGCGCAGCGTGGAGCTGGTCAGTCGGGTGATGATGCTGCAGGTCTGGG
ATACCTCCGGCGACAAGCGCTTCAATTCGCTGATGCCGTCCAATTATCGC
AGTGCCCATGGCATACTGCTCGTCTACGACATAACGTCGTCCAAAAGTTT
CCAAAACATCGATGGCTGGATGAAGGAGATACGGCGCATGTGTCCGGATA
AGGTAACCGTCCTGCTGGTGGGCAACAAAAGTGATGATCCGAACCATCGC
CAGGTGAGCATGGAGCAGGGGTTCAACTATGCCCATCGTGGGGCACTCGG
CTTTGAAGAGGTTTCCGCCAAGAGTGGAATGAATGTATATGACATATTTA
GCTCGTTGGCAATGGACATATACCATCGTTATGTACTTCACAACCCGATC
AGCCCGATGCCATCTGAGCAGGAAGAGGAGGACGCTGCAGAGTCACCGGA
TTAAAAGCTTTCTAGACCAT
BS28122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX2-RA | 588 | CG2885-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Rab9Db-RA | 594 | CG9807-PA | 1..594 | 17..604 | 1680 | 86.6 | Plus |
Rab9E-RA | 594 | CG32673-PA | 1..594 | 17..604 | 1650 | 86.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX2-RA | 791 | CG2885-RA | 68..655 | 17..604 | 2940 | 100 | Plus |
Rab9Db-RA | 871 | CG9807-RA | 68..661 | 17..604 | 1680 | 86.6 | Plus |
Rab9E-RA | 889 | CG32673-RA | 86..679 | 17..604 | 1650 | 86.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10417496..10418083 | 17..604 | 2940 | 100 | Plus |
X | 23542271 | X | 10622565..10623158 | 604..17 | 1680 | 86.6 | Minus |
X | 23542271 | X | 10661165..10661758 | 604..17 | 1650 | 86.3 | Minus |
X | 23542271 | X | 10589182..10589775 | 17..604 | 1635 | 86.1 | Plus |
X | 23542271 | X | 10950370..10950963 | 604..17 | 1635 | 86.1 | Minus |
X | 23542271 | X | 10951907..10952419 | 529..17 | 1500 | 86.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:25:52 has no hits.
BS28122.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:20 Download gff for
BS28122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX2-RA | 12..597 | 17..602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:44 Download gff for
BS28122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX2-RA | 68..653 | 17..602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:04 Download gff for
BS28122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX2-RA | 68..653 | 17..602 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:04 Download gff for
BS28122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10417496..10418081 | 17..602 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:44 Download gff for
BS28122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10311529..10312114 | 17..602 | 100 | | Plus |
BS28122.pep Sequence
Translation from 16 to 603
> BS28122.pep
MSHFDYLFKVLVLGDSGVGKSCLLMRFSDDRFTEKYLRTMGIDVKARSVE
LVSRVMMLQVWDTSGDKRFNSLMPSNYRSAHGILLVYDITSSKSFQNIDG
WMKEIRRMCPDKVTVLLVGNKSDDPNHRQVSMEQGFNYAHRGALGFEEVS
AKSGMNVYDIFSSLAMDIYHRYVLHNPISPMPSEQEEEDAAESPD*
BS28122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX2-PA | 195 | CG2885-PA | 1..195 | 1..195 | 1018 | 100 | Plus |
Rab9Db-PA | 197 | CG9807-PA | 1..197 | 1..195 | 694 | 72.2 | Plus |
Rab9E-PA | 197 | CG32673-PA | 1..197 | 1..195 | 691 | 71.7 | Plus |
Rab9Fa-PA | 197 | CG32671-PA | 1..197 | 1..195 | 691 | 72.2 | Plus |
Rab9D-PA | 197 | CG32678-PA | 1..197 | 1..195 | 688 | 71.7 | Plus |