BS28125.complete Sequence
437 bp assembled on 2012-03-05
GenBank Submission: KX801397
> BS28125.complete
GAAGTTATCAGTCGACATGTACAAGTTAGTCTTCCTCGTCTGCTCCGCCC
TGCTGCTCAGCTATGTCCTGGCCAGGCCACAGGATCAGCGGGCGGGAGCC
ACCAGTGCAGCGACCACCACCACAGCTGCCACCATTGTCAAGCAGGATAA
TGTGAACAACGCCGACGGTAGCTTCAACAGCAGCTATGAGACATCGAACG
GAATACGCGTAGAGAACATTGGCTATCTGAAGAAGATCATCGTTCCCAAG
ACCGAGACCTCCGATGGCCAGGTGATCGACGAACACGAGGAGCTTGTACT
GGTCCAGACCGGATCCTACAGCTACAGCGATCCCGATGGCAATCTCATCA
CCCTGCGCTACGTGGCCGATGAGAACGGATTCCAGCCGGAGGGTGACCAT
CTGCCGGTGGCACCTCAATAGAAGCTTTCTAGACCAT
BS28125.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Ag-RA | 405 | CG8511-PA | 1..405 | 17..421 | 2025 | 100 | Plus |
| Cpr65Ax1-RA | 309 | CG34270-PA | 243..290 | 358..405 | 180 | 91.7 | Plus |
| Cpr65Ax2-RB | 309 | CG18777-PB | 243..290 | 358..405 | 180 | 91.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:28:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Ag-RA | 650 | CG8511-RA | 67..476 | 12..421 | 2035 | 99.8 | Plus |
| Cpr65Ax1-RA | 389 | CG34270-RA | 291..338 | 358..405 | 180 | 91.7 | Plus |
| Cpr65Ax2-RB | 732 | CG18777-RB | 290..337 | 358..405 | 180 | 91.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12408110..12408349 | 182..421 | 1200 | 100 | Plus |
| 2R | 25286936 | 2R | 12407859..12408030 | 12..183 | 845 | 99.4 | Plus |
| 3L | 28110227 | 3L | 6147582..6147629 | 405..358 | 180 | 91.7 | Minus |
| 3L | 28110227 | 3L | 6150453..6150500 | 405..358 | 180 | 91.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:27:58 has no hits.
BS28125.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:26 Download gff for
BS28125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ag-RA | 29..433 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:23 Download gff for
BS28125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ag-RA | 72..476 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:45 Download gff for
BS28125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ag-RA | 72..476 | 17..421 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:45 Download gff for
BS28125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12408112..12408349 | 184..421 | 100 | | Plus |
| 2R | 12407864..12408030 | 17..183 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:23 Download gff for
BS28125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8295369..8295535 | 17..183 | 100 | -> | Plus |
| arm_2R | 8295617..8295854 | 184..421 | 100 | | Plus |
BS28125.pep Sequence
Translation from 16 to 420
> BS28125.pep
MYKLVFLVCSALLLSYVLARPQDQRAGATSAATTTTAATIVKQDNVNNAD
GSFNSSYETSNGIRVENIGYLKKIIVPKTETSDGQVIDEHEELVLVQTGS
YSYSDPDGNLITLRYVADENGFQPEGDHLPVAPQ*
BS28125.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Ag-PA | 134 | CG8511-PA | 1..134 | 1..134 | 682 | 100 | Plus |
| Cpr49Aa-PB | 144 | CG30045-PB | 3..112 | 2..133 | 216 | 42.4 | Plus |
| Cpr49Ae-PA | 134 | CG8505-PA | 30..112 | 40..133 | 215 | 49.5 | Plus |
| Cpr65Az-PA | 239 | CG12330-PA | 116..196 | 40..133 | 209 | 44.7 | Plus |
| Cpr47Ea-PA | 135 | CG9079-PA | 11..122 | 7..133 | 206 | 39.4 | Plus |
