BS28130.complete Sequence
1235 bp assembled on 2012-03-05
GenBank Submission: KX804044
> BS28130.complete
GAAGTTATCAGTCGACATGCTCCGCCAGAACAAGAATACCAGTACCAGTC
TGCTGAACCTAAGCATAGGCGATGTGGGAGGCAGCCATCCACAGGGGCAG
TCGCAATTTTGGGAACTGGATACGCTGCCTAAGCAGTTCGTCCTGTCCAT
GAAAAAGCTCTTCGACATCTTAGATGACAAGCAGACCGGATACGTGCGCT
TCACGGACATCGAGAAGGGCTGGCAGGATGATGGCTCCAAGGGACTGCCA
CGCGGAGTTGTGGACTCACTCCGTCGGGTCACTCCCAGTAGCGGACTTCT
CTCCTTCGAGCGGTTCTGCGCCGGCCTCAAGCTGTGCCTGCTCCGCAATC
AGCAAAACGCTGTGGAAGACCTGAAGTTGCGGCCTCGTTCCCACGGAACT
CTTGCTCCGGAGATGGAGTTCCATTCTCCTGCTCCGCCGCCAAAACCTCC
ACGACAGGTACCCAAGTCCCCTGCTCTGGGTAAAGACGACATTCGCCATG
CCCTCCAAAACTGGCAGCTGAACCTGATGGCGGACGCAGGAAAGTCAAAA
ACGACGCAGTCGCGGGAACAATTCGAACACCGTGGATCGGCTGACGGTGG
CTCTTCCTCCACCTCTGCTTCGGCCACCGACTGGAGCCTGGCCCTTCCGG
CTGTGCCCAAGAAGACCAGCAGCAAGCGCAGAGAGTCGCGGAGGCACACT
CTGCAACACGGCATCGATTACAACATGCTAAAAAGACTGAAGCAATTGGA
GGAGCAGCGGGAACTGCTTCTTTTCGGACTCGATGGCGTGGAGAAGGCAC
GCGATTGGTATATGATGCAGGTGCTCAATGTACAGGAGCAGATAAAGTAT
TTCGGCCGTTTAGGAACCCGATTTGATCAGTGGTCTGAACTGCAGCAAGA
AAGGCTAAACTTTCAACGCGCCCGCGTTTTTGAGGCCAATCGCAGCCTCC
AGATTCTGGCCGACACCTGGGAGCACGGCGGCTACCCACTGCACATTAAT
TTGGCTGTGCCGACACCCACCGTCCCAAAACCGAGGCAGATGTCCGATCT
GCTCAGTCGGGTTCGCGAGAAGCCGCCGCTTCTGTCAGACTTGTACGAGG
CGCAGCACTCTCATTCCCATCCGCAGTTCCTGCGTGCCATGCCCAACTTC
GTGCTCAGCCAGCCCTCGCCGGTCAGCCAATCCTCGGCCGGGCTGGGAGA
CGCCGACGTGGTCTACTGAAAGCTTTCTAGACCAT
BS28130.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3880-RA | 1203 | CG3880-PA | 1..1203 | 17..1219 | 6000 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3880-RA | 1451 | CG3880-RA | 190..1392 | 17..1219 | 6000 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24761288..24762146 | 17..875 | 4280 | 99.9 | Plus |
| 2R | 25286936 | 2R | 24762202..24762546 | 875..1219 | 1725 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 17..103 | 425..512 | 113 | 60.2 | Plus |
| gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 6956..7042 | 425..512 | 113 | 60.2 | Plus |
BS28130.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:29 Download gff for
BS28130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3880-RA | 91..1292 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:45 Download gff for
BS28130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3880-RA | 190..1391 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:06 Download gff for
BS28130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3880-RA | 190..1391 | 17..1218 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:06 Download gff for
BS28130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24761288..24762145 | 17..874 | 99 | -> | Plus |
| 2R | 24762202..24762545 | 875..1218 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:45 Download gff for
BS28130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20648811..20649668 | 17..874 | 99 | -> | Plus |
| arm_2R | 20649725..20650068 | 875..1218 | 100 | | Plus |
BS28130.pep Sequence
Translation from 16 to 1218
> BS28130.pep
MLRQNKNTSTSLLNLSIGDVGGSHPQGQSQFWELDTLPKQFVLSMKKLFD
ILDDKQTGYVRFTDIEKGWQDDGSKGLPRGVVDSLRRVTPSSGLLSFERF
CAGLKLCLLRNQQNAVEDLKLRPRSHGTLAPEMEFHSPAPPPKPPRQVPK
SPALGKDDIRHALQNWQLNLMADAGKSKTTQSREQFEHRGSADGGSSSTS
ASATDWSLALPAVPKKTSSKRRESRRHTLQHGIDYNMLKRLKQLEEQREL
LLFGLDGVEKARDWYMMQVLNVQEQIKYFGRLGTRFDQWSELQQERLNFQ
RARVFEANRSLQILADTWEHGGYPLHINLAVPTPTVPKPRQMSDLLSRVR
EKPPLLSDLYEAQHSHSHPQFLRAMPNFVLSQPSPVSQSSAGLGDADVVY
*
BS28130.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3880-PA | 400 | CG3880-PA | 1..400 | 1..400 | 2094 | 100 | Plus |
