Clone BS28132 Report

Search the DGRC for BS28132

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG9396-RA
Protein status:BS28132.pep: full length peptide match
Sequenced Size:488

Clone Sequence Records

BS28132.complete Sequence

488 bp assembled on 2012-03-05

GenBank Submission: KX801046

> BS28132.complete
GAAGTTATCAGTCGACATGTCTGCCACTCCTCCAACAACACCTGCGCCCA
CGGCTGCAGCTTCCGCCGGAAAGGGTCTTCACTCCAGGGCATATAATGGA
CTTATCAAGGCCTGCGACAAGTATGTGCCCCCCAAGATGCGACCCTTGTG
GATGCACCCAGCAGGACCCAAGACCATATTCTTTTGGGCTCCAATCGTTA
AGTGGAGCCTCGTTATCGCGGGTCTCAGTGATTTGACGCGTCCTGCGGAC
AAGATTTCGCCTAACGGATGTCTGGCTCTTGGGGCAACGAACCTCATCTG
GACGCGCTACTCTCTGGTGATCATTCCCAAGAACTACAGCTTGTTCGCGG
TTAATCTCTTCGTGAGTCTGACGCAGCTCTTCCAATTGGGTAGGTACTAC
AACTACCAGTGGGAGCAGTCGAGGCTGGAGAAAAATGGCGAGCAATGCCC
GGCTATTGAAGCCAGTTTGTAGAAGCTTTCTAGACCAT

BS28132.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9396-RA 456 CG9396-PA 1..456 17..472 2280 100 Plus
CG9399-RD 465 CG9399-PD 62..366 60..364 370 74.8 Plus
CG9399-RA 465 CG9399-PA 62..366 60..364 370 74.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9396-RA 681 CG9396-RA 157..612 17..472 2280 100 Plus
CG9399-RE 1108 CG9399-RE 119..423 60..364 370 74.8 Plus
CG9399-RD 1017 CG9399-RD 331..635 60..364 370 74.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9570483..9570750 472..205 1340 100 Minus
3R 32079331 3R 9571231..9571379 165..17 745 100 Minus
3R 32079331 3R 9572596..9572666 364..294 250 90.1 Minus
3R 32079331 3R 9571133..9571176 205..162 220 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:29:29 has no hits.

BS28132.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:30 Download gff for BS28132.complete
Subject Subject Range Query Range Percent Splice Strand
CG9396-RA 157..612 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:54 Download gff for BS28132.complete
Subject Subject Range Query Range Percent Splice Strand
CG9396-RA 157..612 17..472 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:12 Download gff for BS28132.complete
Subject Subject Range Query Range Percent Splice Strand
CG9396-RA 157..612 17..472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:12 Download gff for BS28132.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9570483..9570749 206..472 100 <- Minus
3R 9571133..9571173 165..205 100 <- Minus
3R 9571232..9571379 17..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:54 Download gff for BS28132.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5396954..5397101 17..164 100   Minus
arm_3R 5396205..5396471 206..472 100 <- Minus
arm_3R 5396855..5396895 165..205 100 <- Minus

BS28132.pep Sequence

Translation from 16 to 471

> BS28132.pep
MSATPPTTPAPTAAASAGKGLHSRAYNGLIKACDKYVPPKMRPLWMHPAG
PKTIFFWAPIVKWSLVIAGLSDLTRPADKISPNGCLALGATNLIWTRYSL
VIIPKNYSLFAVNLFVSLTQLFQLGRYYNYQWEQSRLEKNGEQCPAIEAS
L*

BS28132.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9396-PA 151 CG9396-PA 1..151 1..151 809 100 Plus
CG9399-PD 154 CG9399-PD 11..153 5..148 518 66.7 Plus
CG9399-PA 154 CG9399-PA 11..153 5..148 518 66.7 Plus
CG9399-PB 154 CG9399-PB 11..153 5..148 518 66.7 Plus
CG9399-PE 120 CG9399-PE 1..119 29..148 439 68.3 Plus