BS28132.complete Sequence
488 bp assembled on 2012-03-05
GenBank Submission: KX801046
> BS28132.complete
GAAGTTATCAGTCGACATGTCTGCCACTCCTCCAACAACACCTGCGCCCA
CGGCTGCAGCTTCCGCCGGAAAGGGTCTTCACTCCAGGGCATATAATGGA
CTTATCAAGGCCTGCGACAAGTATGTGCCCCCCAAGATGCGACCCTTGTG
GATGCACCCAGCAGGACCCAAGACCATATTCTTTTGGGCTCCAATCGTTA
AGTGGAGCCTCGTTATCGCGGGTCTCAGTGATTTGACGCGTCCTGCGGAC
AAGATTTCGCCTAACGGATGTCTGGCTCTTGGGGCAACGAACCTCATCTG
GACGCGCTACTCTCTGGTGATCATTCCCAAGAACTACAGCTTGTTCGCGG
TTAATCTCTTCGTGAGTCTGACGCAGCTCTTCCAATTGGGTAGGTACTAC
AACTACCAGTGGGAGCAGTCGAGGCTGGAGAAAAATGGCGAGCAATGCCC
GGCTATTGAAGCCAGTTTGTAGAAGCTTTCTAGACCAT
BS28132.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9396-RA | 456 | CG9396-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
CG9399-RD | 465 | CG9399-PD | 62..366 | 60..364 | 370 | 74.8 | Plus |
CG9399-RA | 465 | CG9399-PA | 62..366 | 60..364 | 370 | 74.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9396-RA | 681 | CG9396-RA | 157..612 | 17..472 | 2280 | 100 | Plus |
CG9399-RE | 1108 | CG9399-RE | 119..423 | 60..364 | 370 | 74.8 | Plus |
CG9399-RD | 1017 | CG9399-RD | 331..635 | 60..364 | 370 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9570483..9570750 | 472..205 | 1340 | 100 | Minus |
3R | 32079331 | 3R | 9571231..9571379 | 165..17 | 745 | 100 | Minus |
3R | 32079331 | 3R | 9572596..9572666 | 364..294 | 250 | 90.1 | Minus |
3R | 32079331 | 3R | 9571133..9571176 | 205..162 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:29:29 has no hits.
BS28132.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:30 Download gff for
BS28132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9396-RA | 157..612 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:54 Download gff for
BS28132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9396-RA | 157..612 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:12 Download gff for
BS28132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9396-RA | 157..612 | 17..472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:12 Download gff for
BS28132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9570483..9570749 | 206..472 | 100 | <- | Minus |
3R | 9571133..9571173 | 165..205 | 100 | <- | Minus |
3R | 9571232..9571379 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:54 Download gff for
BS28132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5396954..5397101 | 17..164 | 100 | | Minus |
arm_3R | 5396205..5396471 | 206..472 | 100 | <- | Minus |
arm_3R | 5396855..5396895 | 165..205 | 100 | <- | Minus |
BS28132.pep Sequence
Translation from 16 to 471
> BS28132.pep
MSATPPTTPAPTAAASAGKGLHSRAYNGLIKACDKYVPPKMRPLWMHPAG
PKTIFFWAPIVKWSLVIAGLSDLTRPADKISPNGCLALGATNLIWTRYSL
VIIPKNYSLFAVNLFVSLTQLFQLGRYYNYQWEQSRLEKNGEQCPAIEAS
L*
BS28132.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9396-PA | 151 | CG9396-PA | 1..151 | 1..151 | 809 | 100 | Plus |
CG9399-PD | 154 | CG9399-PD | 11..153 | 5..148 | 518 | 66.7 | Plus |
CG9399-PA | 154 | CG9399-PA | 11..153 | 5..148 | 518 | 66.7 | Plus |
CG9399-PB | 154 | CG9399-PB | 11..153 | 5..148 | 518 | 66.7 | Plus |
CG9399-PE | 120 | CG9399-PE | 1..119 | 29..148 | 439 | 68.3 | Plus |