Clone BS28133 Report

Search the DGRC for BS28133

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG13474-RA
Protein status:BS28133.pep: gold
Sequenced Size:479

Clone Sequence Records

BS28133.complete Sequence

479 bp assembled on 2012-03-05

GenBank Submission: KX802667

> BS28133.complete
GAAGTTATCAGTCGACATGCTACTACAAGCGGAATTTACAAAAATCGACG
ATGCCCTTGACATCTGTAGCTCCATGGAGGAGGATCTGAACGAGTGTCTG
AATATCGTAGGGGCCATGATCGAGAAGTACAATGCTCCCGGACGCTACAT
CATATCCATGGATCCCTTCGCTGAGGATTTTCAACTAAGCAACAGCGAGT
CCACGGACTTGGATGGGTCGTCTATTGGAAGTTGTGACTCCGAGCTGGAC
ATGCTAAGCCAACTCTACGGAGCCAGAAGTGCCCAGGAGTTGGATGAATC
TTACGTCGATGTGCGCTATAAGTTTATCAAGCTGAAGCGGTTCTTCGAGG
GTACCTTTACCCATTTTCTAAGGATCGTTGACTGTGCTGATCGTCAAAAT
AAGATTTCACATCGCATTTTTATGAACTCGCAGGATACCAAGGGGAAGCG
GTGCAGGCACTAGAAGCTTTCTAGACCAT

BS28133.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13474-RA 447 CG13474-PA 1..447 17..463 2175 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13474-RA 555 CG13474-RA 5..452 16..463 2180 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14696654..14697101 463..16 2180 99.1 Minus
Blast to na_te.dros performed on 2014-11-28 08:29:38 has no hits.

BS28133.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:31 Download gff for BS28133.complete
Subject Subject Range Query Range Percent Splice Strand
CG13474-RA 6..452 17..463 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:00 Download gff for BS28133.complete
Subject Subject Range Query Range Percent Splice Strand
CG13474-RA 6..452 17..463 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:15 Download gff for BS28133.complete
Subject Subject Range Query Range Percent Splice Strand
CG13474-RA 6..452 17..463 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:15 Download gff for BS28133.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14696654..14697100 17..463 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:00 Download gff for BS28133.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14689754..14690200 17..463 99   Minus

BS28133.pep Sequence

Translation from 16 to 462

> BS28133.pep
MLLQAEFTKIDDALDICSSMEEDLNECLNIVGAMIEKYNAPGRYIISMDP
FAEDFQLSNSESTDLDGSSIGSCDSELDMLSQLYGARSAQELDESYVDVR
YKFIKLKRFFEGTFTHFLRIVDCADRQNKISHRIFMNSQDTKGKRCRH*

BS28133.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13474-PA 148 CG13474-PA 1..148 1..148 769 100 Plus