Clone BS28136 Report

Search the DGRC for BS28136

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG1138-RA
Protein status:BS28136.pep: full length peptide match
Sequenced Size:905

Clone Sequence Records

BS28136.complete Sequence

905 bp assembled on 2012-03-05

GenBank Submission: KX805918

> BS28136.complete
GAAGTTATCAGTCGACATGAATTCATTACCAATACTGCAATCAGTGGACC
AAAATTTATCGTGCAAGGCAGCAGGAATAAGTAAAATGGAAAACACTAAA
CCAAATGATAAGAAACTGGCACAATCAAAGTTCGCATTCAAACATAACGG
GCCAAAAAAAGTGTTTCACTGCACGATGCAGAGTGTTTTGCAATCCGAAG
ATTGCTGGATCGCTGAGGAAGTTCTAGAAGAATCAAACGAGAAAAGCAAT
CTGGAACTCGAAGATATTTACGATGAGGTGTTTCGCTTAAAGCGGCGCGT
AAATCGACTCAATTACCAACTAGGTACCAATATACCGGAATGCCCAAAAA
TAGATCCCTGCCTGGATGATCATATATTTTTGACAAATGTAAAGGAAGTT
CATCCCGAAATTCTTCAGCTGAAGTTTGCAAGCCATAAACTACAGCACCA
ACTGACTCAGATGCAATCCGTCCGAAGATCATCCAATCTGGCCAAAAAAC
TGGTACGGGATGAATACTGCAGAAGCAAGAAATTAGGGGATCAGTTGCAG
ATTGAAATTCAAAAACTAGACTCCTTTAAGCTCAAATTCGAAAAACATCA
AGGACTATGTCTTCAACGGTTTAGGTTCTTGGACCAAGATAAGTATACTG
GCAGGGAGTTCTATGAATTTATAGAAAAAAGTAATGAGATGATAACAACT
CAACTTAAAAAGCAGATGTTAAAGAGTGAATACAAACCTTTTCGGAAGGA
AGCCGCTAGGGTGACAATCTCTTTAAAAACAGCCGCGGAAAATTTGCAAG
ATTATCTTTCAAGCGTGATAAATAACAAAAAATGTGAAATCTTCCAGAAC
GTGAAAAATTCCTGTGTATCCATTCGTTCAGACCTCTAAAAGCTTTCTAG
ACCAT

BS28136.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1138-RA 873 CG1138-PA 1..873 17..889 4350 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1138-RA 1398 CG1138-RA 87..959 17..889 4350 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6597064..6597936 889..17 4350 99.9 Minus
Blast to na_te.dros performed on 2014-11-28 08:27:48 has no hits.

BS28136.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:25 Download gff for BS28136.complete
Subject Subject Range Query Range Percent Splice Strand
CG1138-RA 87..956 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:19 Download gff for BS28136.complete
Subject Subject Range Query Range Percent Splice Strand
CG1138-RA 87..956 17..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:43 Download gff for BS28136.complete
Subject Subject Range Query Range Percent Splice Strand
CG1138-RA 87..956 17..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:43 Download gff for BS28136.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6597066..6597936 17..887 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:19 Download gff for BS28136.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2422788..2423658 17..887 99   Minus

BS28136.pep Sequence

Translation from 16 to 888

> BS28136.pep
MNSLPILQSVDQNLSCKAAGISKMENTKPNDKKLAQSKFAFKHNGPKKVF
HCTMQSVLQSEDCWIAEEVLEESNEKSNLELEDIYDEVFRLKRRVNRLNY
QLGTNIPECPKIDPCLDDHIFLTNVKEVHPEILQLKFASHKLQHQLTQMQ
SVRRSSNLAKKLVRDEYCRSKKLGDQLQIEIQKLDSFKLKFEKHQGLCLQ
RFRFLDQDKYTGREFYEFIEKSNEMITTQLKKQMLKSEYKPFRKEAARVT
ISLKTAAENLQDYLSSVINNKKCEIFQNVKNSCVSIRSDL*

BS28136.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1138-PA 290 CG1138-PA 1..290 1..290 1500 100 Plus