BS28139.complete Sequence
593 bp assembled on 2012-03-05
GenBank Submission: KX805625
> BS28139.complete
GAAGTTATCAGTCGACATGTTAAACAGCGCTAATAACAATTCTCCCCAGC
ACCCGGTGAGTGCACCATCCGATATCAACATGAATGGCTATAACCGAAAA
TTGCCACAAAAACGTGGCTATGAGATGCCAAAATACTCTGATCCAAAAAA
GAAAATGTGCAAGGAGCGCATTCCCCAGCCGAAGAACACGGTGGCCATGC
TGAATGAGCTAAGACATGGACTGATTTACAAATTGGAGTCACAGACTGGT
CCGGTACACGCACCTCTATTCACGATATCCGTGGAGGTCGATGGACAGAA
ATACTTGGGCCAGGGCCGTAGTAAAAAAGTTGCACGCATCGAAGCAGCAG
CAACTGCACTGCGCAGCTTTATACAGTTTAAGGATGGAGCAGTTCTGTCG
CCTCTGAAGCCGGCGGGCAACTTGGACTTTACCAGCGATGAACATCTTGA
AAATGGTATTGAAAATTTGTCCAGTTCAAAAATGTTTGAGATCATTCAGA
CGATGTTGACTGAAAAGCTATCCAACCCTACCTCGCTTGAACAACCCACG
TTTTGCATGAGTCAGAGCAAGTATTAGAAGCTTTCTAGACCAT
BS28139.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adar-RC | 561 | CG12598-PC | 1..561 | 17..577 | 2805 | 100 | Plus |
| Adar-RN | 2010 | CG12598-PN | 1..550 | 17..566 | 2750 | 100 | Plus |
| Adar-RD | 1179 | CG12598-PD | 1..550 | 17..566 | 2750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:53:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adar-RC | 3451 | CG12598-RC | 502..1063 | 16..577 | 2810 | 100 | Plus |
| Adar-RN | 6823 | CG12598-RN | 502..1052 | 16..566 | 2755 | 100 | Plus |
| Adar-RD | 2042 | CG12598-RD | 502..1052 | 16..566 | 2755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1779088..1779380 | 285..577 | 1465 | 100 | Plus |
| X | 23542271 | X | 1778814..1778962 | 140..288 | 745 | 100 | Plus |
| X | 23542271 | X | 1778612..1778699 | 53..140 | 440 | 100 | Plus |
| X | 23542271 | X | 1775702..1775738 | 16..52 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:53:06 has no hits.
BS28139.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:32 Download gff for
BS28139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adar-RC | 483..1038 | 22..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:37 Download gff for
BS28139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adar-RC | 508..1063 | 22..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:59:36 Download gff for
BS28139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adar-RC | 508..1063 | 22..577 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:59:36 Download gff for
BS28139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1775708..1775738 | 22..52 | 100 | -> | Plus |
| X | 1778612..1778699 | 53..140 | 100 | -> | Plus |
| X | 1778815..1778960 | 141..286 | 100 | -> | Plus |
| X | 1779090..1779380 | 287..577 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:37 Download gff for
BS28139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1669741..1669771 | 22..52 | 100 | -> | Plus |
| arm_X | 1672645..1672732 | 53..140 | 100 | -> | Plus |
| arm_X | 1672848..1672993 | 141..286 | 100 | -> | Plus |
| arm_X | 1673123..1673413 | 287..577 | 100 | | Plus |
BS28139.pep Sequence
Translation from 16 to 576
> BS28139.pep
MLNSANNNSPQHPVSAPSDINMNGYNRKLPQKRGYEMPKYSDPKKKMCKE
RIPQPKNTVAMLNELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQG
RSKKVARIEAAATALRSFIQFKDGAVLSPLKPAGNLDFTSDEHLENGIEN
LSSSKMFEIIQTMLTEKLSNPTSLEQPTFCMSQSKY*
BS28139.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adar-PC | 186 | CG12598-PC | 1..186 | 1..186 | 963 | 100 | Plus |
| Adar-PD | 392 | CG12598-PD | 1..184 | 1..184 | 948 | 99.5 | Plus |
| Adar-PK | 392 | CG12598-PK | 1..184 | 1..184 | 948 | 99.5 | Plus |
| Adar-PN | 669 | CG12598-PN | 1..184 | 1..184 | 948 | 99.5 | Plus |
| Adar-PM | 188 | CG12598-PM | 15..188 | 13..186 | 898 | 100 | Plus |
