Clone BS28142 Report

Search the DGRC for BS28142

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptE(spl)m4-BFM-RA
Protein status:BS28142.pep: gold
Sequenced Size:491

Clone Sequence Records

BS28142.complete Sequence

491 bp assembled on 2012-03-05

GenBank Submission: KX805959

> BS28142.complete
GAAGTTATCAGTCGACATGTGCCAGAACAAGATCAACACCAACAACACCA
TGACCATCAAATCGAACAAGAAGCTGTCCTACAGCGTGAAGAAACTGCTG
CAGAAGATCTTCAAGCAGCAACAGCGCGTCGAGGAGGAGCAGAACCTCAA
GAACGCCCTCAAGGCCAACTCTTTGGAGTCTCTGGAATCCATGGAAAACA
GCCGCAACGCCGATCTGGAATCCGCCTCCATCTGCGCCTCTCTGGAGTCC
TGCGAGAACGAGGCCAACGAGCGTCTCTCCCAGTCCTGCGAAATTGAGGA
CTACGACTTCGAGCAACTGCCCACCGTTCCCGTTCACTTCGTCCGCACCG
CTCACGGCACATTCTTCTGGACCGCCGTCTCCGATTTGCCAGCCGACAAC
GACCTCGTCGAGCCCCTCTACTGCAGCACCTCCAACGCCATCGCTATCCC
CCAGGATCGTTGGGTTCAGGCCTAAAAGCTTTCTAGACCAT

BS28142.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m4-BFM-RA 459 CG6099-PA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m4-BFM-RA 759 CG6099-RA 86..547 16..477 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26024033..26024494 477..16 2310 100 Minus
Blast to na_te.dros performed 2014-11-28 04:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2289..2430 9..154 134 61.3 Plus

BS28142.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:32 Download gff for BS28142.complete
Subject Subject Range Query Range Percent Splice Strand
m4-RA 66..522 17..473 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:42 Download gff for BS28142.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m4-BFM-RA 87..543 17..473 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:59:51 Download gff for BS28142.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m4-BFM-RA 87..543 17..473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:59:51 Download gff for BS28142.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26024037..26024493 17..473 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:42 Download gff for BS28142.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21849759..21850215 17..473 100   Minus

BS28142.pep Sequence

Translation from 16 to 474

> BS28142.pep
MCQNKINTNNTMTIKSNKKLSYSVKKLLQKIFKQQQRVEEEQNLKNALKA
NSLESLESMENSRNADLESASICASLESCENEANERLSQSCEIEDYDFEQ
LPTVPVHFVRTAHGTFFWTAVSDLPADNDLVEPLYCSTSNAIAIPQDRWV
QA*

BS28142.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m4-BFM-PA 152 CG6099-PA 1..152 1..152 784 100 Plus
E(spl)malpha-BFM-PA 138 CG8337-PA 1..138 1..152 217 39.8 Plus