BS28148.complete Sequence
2474 bp assembled on 2012-05-15
GenBank Submission: KX802544
> BS28148.complete
GAAGTTATCAGTCGACATGCTCACAGACATTGGAGGCAGTGCAATCGGTA
ACGGAAATGGCCCCAGTGGCCACAACAGTGGCAATGGTCATGTCCTAGTC
AGCGGACTTCACTCGAGCGACTCCTCCAGCGGAATTGGCAGTGCGAGCAG
TGAGAAGTTGGCAACGCGCAGCGACGAGACCCATGCCCAAAGGCGGAGCA
GTGGCGAAGGGGATGCTGACGAGGATGCGGATGATGACGATGACGATGAG
GATGAAGATGAGGATGATGGGGATGAAACTACGGCGGAGTCCCCTTTGCT
GCCCCTGAAGGAAGACGAGCCATCGCCCCCTCAAGTCCACAGTTCCTCGC
ACATATCAGCCAGTAGGTCACCCCACTTCGGCACCTCAGCTGGTGACCTC
GAGCCAAAGCACCTCCCATTAGCACCGAACTCCCCGTCCAACGAGCAGGC
CAAGTGCGAGGGTCCGGAAGGAGAGGCCAACAACAACAACAGCACCAGCA
GCAACCACAATCACAATCCCAACCACATTCGCACCCATAGGCGCCAGCAC
GAGTATCAGCTCTATCCCAACGACACCTTCGCTCAACTGGAGGGAAAGGC
CCCCAAGCCGAACACCAAGATGCAGACCAAAGTGGATGCGGTGGGCCAGA
TCACGGGTCCGTGGGGAAAGTGGCAGCTGCGAACGGTGCTACTGATCTTC
CTGTGCAAGATTCCATCGTCCTGGTTTATGGCCTGCATCATTTTCACGGC
CCCAGCACCCAGGCACGGCGAGTTCTTCTGCAAGCCCCCCCACACAATCG
GAGCCCAGAACCAAACGCAATGGATCAAGGTCTCGCATCCGCAGAAGGAG
GAGAGCGACGATCAGGAGTTTAGCATTGACTTCTGCAATGTCTACCAGGA
TGCACAGGAGCACGCCCATCACTATTACAACTACGAGAACAGTGACCAGG
AGCCGCGCGTGTGGGAGAAACCTCTGCACCGCAACTCCAACGTAATTCCT
TGCACCGAGTTCCAGCACGAGTCCGACTACCACTCGGTGGTCACGCAGTA
CGACTTGGTCTGCTCCCGGGACATTCTCGTATCCGTCACTCAGTTCTTCC
ACCTCTTTGGCGTGCTCACAGGAGGCATATTGGCTAATCAGCTGCTGAAA
TATTTCAGTCCCCGAAATGTGATGCTCTTCGGCATGATCACGCAGATATT
TTGTGGTAACCTCACGGGGCACGTGGCCTCCTACGAGCTCCACGTGTTCT
TCCGGTGCCTCTCCGCCGTTTGCTGTGCCCAGATGTACACGGCCGGAGGC
CAAATCATGGCCGACATAACGGGGGGAAAGTACCGAACTTGCGTCTCCAC
ACTCTTTGAGCAGTTCTGGTCTATTGGGGTAATGATGTTGCCCGGAGTTG
CCAGCTTCTGGTCCAGCTGGTCCCACCTCTACATGGCCATCTCGTGGCCA
ACTGTGATACTAATCTATCTGTGGCAGTGGATTCCCGACTCGCCGAGATG
GCTTATCGCCCGCGGACGCACACAGGACGCCAAGAAGATCTTGCTGGAGT
GCGTGGAGGTGAATGGGACGGGCTACAACCTACCGCACGACATCGACCAG
CAGCTGGAGCTGCAGGCGCAGACCGCCATGGACGCTCCTCCGCCGAGTGG
CTGGTGGTCGATGTGGAAGGGGGAGCGAGCGGTGCGACACATTGTGTGTG
TGCACCTGGCCTGGTCGCTGTACATTGTGGTCTATTACGGCATGCTGCTC
AACATCCGCTCCTTCAGTCGCGACCACCTGTACATTAACACCTTTTTCGC
GGGCTTCAGCGAGATGATGGGCACTTTCTTCGGGCTCTTCCTGATTCTGA
AAACCACCCGCAAGTGGCTGTGGACGGGACTCTTTAACATCGTGGCAGGA
TGCATTGCCTACTGCGGCTGGCTGGTCCCGAAGCCCAGCGTAATTGGGCT
GGATCCGAATGTAGCCCTGCTGATGTGCTCTGCCATGGTCTCGAAGATGG
CCATTTCCACTACGCTCAGTATACTGACTACCTGCACGGTGGAGCTGGTT
TCCGATGACAAGAAGAAGATCACTTCCTTCTCCACGATTTGCTGGGCCCG
TTTCTGGCTGCTGGGAGCGCCCTTTATTGGATCCACAGTGGTCTTCGGCC
AACTCATTCCCCAGACGGCCTTCGCATCTCTGGCCATTCTCGGTGGCCTG
TGCACCTCCCTGATCAGCAGTCCCAGGACCCATCCCATCTCAAGACCCTC
CTCGCCTGCTGCACAGGGAACCCAAAACATCACCTCGCAGTTCACCATCA
TTGACGGCATGGACAACAAGGGGTACAGCCCCACCTCGAAGACCATCCAC
TCGAACAGCACTATTTTAAAACTAAACACGCCGCAATCGAATCTACCTCC
ACAACTGATGCCCGGCATTTGGACGACCAAGATAACCGAGGATGGCCCAC
CCATGTGAAAGCTTTCTAGACCAT
BS28148.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44098-RC | 2442 | CG44098-PC | 1..2442 | 17..2458 | 12195 | 100 | Plus |
| CG44098-RE | 2442 | CG44098-PE | 1..2442 | 17..2458 | 12195 | 100 | Plus |
| CG44098-RD | 2328 | CG44098-PD | 153..2328 | 283..2458 | 10865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44098-RC | 3925 | CG44098-RC | 284..2726 | 17..2459 | 12200 | 100 | Plus |
| CG44098-RE | 4187 | CG44098-RE | 546..2988 | 17..2459 | 12200 | 100 | Plus |
| CG44098-RD | 3830 | CG44098-RD | 455..2631 | 283..2459 | 10870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4751608..4752590 | 2459..1477 | 4915 | 100 | Minus |
| 3R | 32079331 | 3R | 4757543..4758412 | 1152..283 | 4335 | 99.9 | Minus |
| 3R | 32079331 | 3R | 4767978..4768245 | 284..17 | 1340 | 100 | Minus |
| 3R | 32079331 | 3R | 4752794..4752965 | 1479..1308 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 4753040..4753194 | 1307..1153 | 775 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 11:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2487 | 478..580 | 147 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1512..1614 | 472..573 | 143 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2477 | 478..621 | 142 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6824 | 478..560 | 142 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6914 | 402..560 | 139 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6812 | 477..560 | 134 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2397 | 478..560 | 132 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6881 | 478..580 | 132 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6863 | 478..577 | 130 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1537..1577 | 476..516 | 124 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2947..3008 | 479..537 | 123 | 69.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1160 | 479..577 | 123 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1560..1626 | 478..537 | 121 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2520 | 478..577 | 119 | 62.5 | Plus |
BS28148.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:24 Download gff for
BS28148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31530-RA | 151..2327 | 280..2457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:26 Download gff for
BS28148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44098-RC | 284..2724 | 17..2457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:40:09 Download gff for
BS28148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44098-RE | 546..2986 | 17..2457 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:40:09 Download gff for
BS28148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4752797..4752965 | 1308..1476 | 100 | <- | Minus |
| 3R | 4753040..4753194 | 1153..1307 | 100 | <- | Minus |
| 3R | 4751610..4752590 | 1477..2457 | 100 | <- | Minus |
| 3R | 4757543..4758411 | 284..1152 | 99 | <- | Minus |
| 3R | 4767979..4768245 | 17..283 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:26 Download gff for
BS28148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 577332..578312 | 1477..2457 | 100 | <- | Minus |
| arm_3R | 578519..578687 | 1308..1476 | 100 | <- | Minus |
| arm_3R | 578762..578916 | 1153..1307 | 100 | <- | Minus |
| arm_3R | 583265..584133 | 284..1152 | 99 | <- | Minus |
| arm_3R | 593701..593967 | 17..283 | 100 | | Minus |
BS28148.pep Sequence
Translation from 16 to 2457
> BS28148.pep
MLTDIGGSAIGNGNGPSGHNSGNGHVLVSGLHSSDSSSGIGSASSEKLAT
RSDETHAQRRSSGEGDADEDADDDDDDEDEDEDDGDETTAESPLLPLKED
EPSPPQVHSSSHISASRSPHFGTSAGDLEPKHLPLAPNSPSNEQAKCEGP
EGEANNNNSTSSNHNHNPNHIRTHRRQHEYQLYPNDTFAQLEGKAPKPNT
KMQTKVDAVGQITGPWGKWQLRTVLLIFLCKIPSSWFMACIIFTAPAPRH
GEFFCKPPHTIGAQNQTQWIKVSHPQKEESDDQEFSIDFCNVYQDAQEHA
HHYYNYENSDQEPRVWEKPLHRNSNVIPCTEFQHESDYHSVVTQYDLVCS
RDILVSVTQFFHLFGVLTGGILANQLLKYFSPRNVMLFGMITQIFCGNLT
GHVASYELHVFFRCLSAVCCAQMYTAGGQIMADITGGKYRTCVSTLFEQF
WSIGVMMLPGVASFWSSWSHLYMAISWPTVILIYLWQWIPDSPRWLIARG
RTQDAKKILLECVEVNGTGYNLPHDIDQQLELQAQTAMDAPPPSGWWSMW
KGERAVRHIVCVHLAWSLYIVVYYGMLLNIRSFSRDHLYINTFFAGFSEM
MGTFFGLFLILKTTRKWLWTGLFNIVAGCIAYCGWLVPKPSVIGLDPNVA
LLMCSAMVSKMAISTTLSILTTCTVELVSDDKKKITSFSTICWARFWLLG
APFIGSTVVFGQLIPQTAFASLAILGGLCTSLISSPRTHPISRPSSPAAQ
GTQNITSQFTIIDGMDNKGYSPTSKTIHSNSTILKLNTPQSNLPPQLMPG
IWTTKITEDGPPM*
BS28148.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44098-PC | 813 | CG44098-PC | 1..813 | 1..813 | 4402 | 100 | Plus |
| CG44098-PE | 813 | CG44098-PE | 1..813 | 1..813 | 4402 | 100 | Plus |
| CG44098-PD | 775 | CG44098-PD | 52..775 | 90..813 | 3938 | 100 | Plus |
| CG44098-PB | 612 | CG44098-PB | 1..612 | 202..813 | 3324 | 100 | Plus |
| CG4462-PA | 573 | CG4462-PA | 41..536 | 207..737 | 1070 | 40.4 | Plus |
