Clone BS28150 Report

Search the DGRC for BS28150

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG34427-RB
Protein status:BS28150.pep: gold
Sequenced Size:842

Clone Sequence Records

BS28150.complete Sequence

842 bp assembled on 2012-03-05

GenBank Submission: KX802449

> BS28150.complete
GAAGTTATCAGTCGACATGACCCAAAGGATTGAAAATGTAGTGAAAGGAC
TAGTGATGGTGGTTCTGGCTTTTATGGTGGCACAAACGGTGTCCGATTGC
AATGTCTGTCAATCAAATCAAGTGGCCTGCATCAACTCCACGTCCTTTTA
CTTGTGTTTTGGAGATGGAACTCCACATCGTGATCAGCTATACCATTGCT
TAGAAGGATTTGACTGCACCAATCTCACGGCGATTTGTGTTCAGAAGAGC
AGCCAGCGGCCTCCCAGTTGCGGGGATACCTCTCAATGTGGCCAATGTAG
TGCCAATCGGAATTATCTATTCGCGTGCCAGAGTCGTGGTATCTTTCAGA
TGTGCTATGGAGCCACTAGACCCACTGGGCAATTTGGTTACTGCCCCACG
GGTACGGTTTGTGATGCCAGCAGCACTGCGATTTGTGTGCCTGAGGTCGC
GGGTCAAACGCTGACCTGTGACATAAATGACGAACTGGTGGACACCACCA
CTGCAGCGTCCGTGACCACCGAAACTACTGGCGGTACCACTGAAAGTAGC
ACTGAGAGCACAACTGAAAGCAGCACCGATTCAACTGTAACCACCGAGAC
GCCCACTACAGTGACGCCTCTAACTCCTGCCCAGATGTGTGCCCAAAGGA
ATGCCACTGGTCTTTTTCCCGTCATTCCTGCGGATCCCTATTGCCAGCGC
TACATTAGTTGTTACTTTCAAAAGAACGTTCTTATCAAATCTGCCGAATA
TAACTGTCCCACAGATTCCTGGTTTGTTGCTCAAACTCAGAGTTGCGTCT
ACGTAAATCCCGGCTACTGTCTTTAAAAGCTTTCTAGACCAT

BS28150.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG34427-RB 810 CG34427-PB 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG34427-RB 865 CG34427-RB 16..825 17..826 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8805043..8805579 163..699 2685 100 Plus
3L 28110227 3L 8805645..8805772 699..826 640 100 Plus
3L 28110227 3L 8804878..8804984 58..164 535 100 Plus
3L 28110227 3L 8804779..8804822 17..60 220 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:56:43 has no hits.

BS28150.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:35 Download gff for BS28150.complete
Subject Subject Range Query Range Percent Splice Strand
CG34427-RB 16..823 17..824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:11 Download gff for BS28150.complete
Subject Subject Range Query Range Percent Splice Strand
CG34427-RB 16..823 17..824 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:00:52 Download gff for BS28150.complete
Subject Subject Range Query Range Percent Splice Strand
CG34427-RB 16..823 17..824 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:00:52 Download gff for BS28150.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8804779..8804820 17..58 100 -> Plus
3L 8804879..8804984 59..164 100 -> Plus
3L 8805045..8805579 165..699 100 -> Plus
3L 8805646..8805770 700..824 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:11 Download gff for BS28150.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8797879..8797920 17..58 100 -> Plus
arm_3L 8797979..8798084 59..164 100 -> Plus
arm_3L 8798145..8798679 165..699 100 -> Plus
arm_3L 8798746..8798870 700..824 100   Plus

BS28150.pep Sequence

Translation from 16 to 825

> BS28150.pep
MTQRIENVVKGLVMVVLAFMVAQTVSDCNVCQSNQVACINSTSFYLCFGD
GTPHRDQLYHCLEGFDCTNLTAICVQKSSQRPPSCGDTSQCGQCSANRNY
LFACQSRGIFQMCYGATRPTGQFGYCPTGTVCDASSTAICVPEVAGQTLT
CDINDELVDTTTAASVTTETTGGTTESSTESTTESSTDSTVTTETPTTVT
PLTPAQMCAQRNATGLFPVIPADPYCQRYISCYFQKNVLIKSAEYNCPTD
SWFVAQTQSCVYVNPGYCL*

BS28150.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG34427-PB 269 CG34427-PB 1..269 1..269 1460 100 Plus
CG14958-PA 145 CG14958-PA 6..145 11..154 359 46.5 Plus
CG34426-PA 296 CG34426-PA 1..289 12..267 252 30.2 Plus
CG13312-PA 342 CG13312-PA 14..244 12..268 216 26.5 Plus
CG13308-PB 233 CG13308-PB 12..221 15..268 212 28.5 Plus