BS28151.complete Sequence
1244 bp assembled on 2012-03-05
GenBank Submission: KX805493
> BS28151.complete
GAAGTTATCAGTCGACATGTTCGGACACTTTAAGCTCGTCTATCCGGCTC
CTATATCGGAGCCCATACAGTCTAGGGATTCGAATGCATACATGATGGAG
ACGCTGCGAAATTCGGGCTTGAATTTGAAGAACGATTTCGGTATAGGCCG
CAAGATTTGGAGGGTGTTTTCGTTCACCTACAATATGGTGATACTTCCCG
TAAGTTTCCCAATCAACTATGTGATACATCTGGCGGAGTTCCCGCCGGAG
CTGCTGCTGCAATCCCTGCAACTGTGCCTCAACACTTGGTGCTTCGCTCT
GAAGTTCTTCACTCTGATCGTCTATACGCACCGCTTGGAGCTGGCCAACA
AGCACTTTGACGAATTGGATAAGTACTGCGTGAAGCCGGCGGAGAAGCGC
AAGGTTCGCGACATGGTGGCCACTATTACAAGACTGTACCTGACCTTCGT
CGTGGTCTACGTCCTCTACGCCACCTCCACGCTACTGGACGGACTACTGC
ACCACCGTGTTCCCTACAATACGTACTATCCGTTCATAAACTGGCGAGTC
GATCGGACCCAGATGTACATCCAGAGTTTTCTGGAGTACTTCACCGTGGG
TTATGCCATATATGTGGCCACCGCCACCGATTCCTACCCTGTGATTTACG
TGGCAGCCCTGCGAACTCATATTCTCTTGCTCAAGGACCGTATCATTTAC
TTGGGCGATCCCAGCAACGAGGGTAGCAGCGACCCGAGCTACATGTTTAA
ATCGTTGGTGGATTGTATCAAGGCACACAGAACCATGCTAAATTTTTGTG
ATGCCATTCAACCAATCATCTCTGGCACGATATTTGCCCAATTCATCATA
TGCGGATCGATCCTGGGCATAATTATGATCAACATGGTATTGTTCGCTGA
TCAATCGACCCGATTCGGCATAGTCATCTACGTTATGGCCGTCCTTCTGC
AGACTTTTCCGCTTTGCTTCTACTGCAACGCCATCGTGGACGACTGCAAA
GAACTGGCCCACGCACTTTTCCATTCCGCCTGGTGGGTGCAGGACAAGCG
ATACCAGCGGACTGTCATCCAGTTCCTGCAGAAACTGCAGCAGCCCATGA
CCTTCACCGCCATGAACATATTTAACATTAATTTGGCCACTAACATCAAT
GTAGCCAAGTTCGCCTTCACCGTGTACGCCATCGCGAGCGGTATGAACCT
GGACCAAAAGTTAAGCATTAAGGAATAGAAGCTTTCTAGACCAT
BS28151.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or43b-RA | 1212 | CG17853-PA | 1..1212 | 17..1228 | 6060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or43b-RA | 1412 | CG17853-RA | 62..1275 | 17..1230 | 6070 | 100 | Plus |
| Cul1-RB | 3886 | CG1877-RB | 3419..3779 | 1153..793 | 1805 | 100 | Minus |
| Cul1-RB | 3886 | CG1877-RB | 3279..3358 | 1230..1151 | 400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7921768..7922543 | 792..17 | 3880 | 100 | Minus |
| 2R | 25286936 | 2R | 7921112..7921472 | 1153..793 | 1805 | 100 | Minus |
| 2R | 25286936 | 2R | 7920972..7921051 | 1230..1151 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:56:51 has no hits.
BS28151.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:36 Download gff for
BS28151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or43b-RA | 67..1273 | 22..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:16 Download gff for
BS28151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or43b-RA | 67..1273 | 22..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:00:56 Download gff for
BS28151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or43b-RA | 67..1273 | 22..1228 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:00:56 Download gff for
BS28151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7921115..7921472 | 793..1150 | 100 | <- | Minus |
| 2R | 7921768..7922538 | 22..792 | 100 | | Minus |
| 2R | 7920974..7921051 | 1151..1228 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:16 Download gff for
BS28151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3808479..3808556 | 1151..1228 | 100 | <- | Minus |
| arm_2R | 3808620..3808977 | 793..1150 | 100 | <- | Minus |
| arm_2R | 3809273..3810043 | 22..792 | 100 | | Minus |
BS28151.pep Sequence
Translation from 16 to 1227
> BS28151.pep
MFGHFKLVYPAPISEPIQSRDSNAYMMETLRNSGLNLKNDFGIGRKIWRV
FSFTYNMVILPVSFPINYVIHLAEFPPELLLQSLQLCLNTWCFALKFFTL
IVYTHRLELANKHFDELDKYCVKPAEKRKVRDMVATITRLYLTFVVVYVL
YATSTLLDGLLHHRVPYNTYYPFINWRVDRTQMYIQSFLEYFTVGYAIYV
ATATDSYPVIYVAALRTHILLLKDRIIYLGDPSNEGSSDPSYMFKSLVDC
IKAHRTMLNFCDAIQPIISGTIFAQFIICGSILGIIMINMVLFADQSTRF
GIVIYVMAVLLQTFPLCFYCNAIVDDCKELAHALFHSAWWVQDKRYQRTV
IQFLQKLQQPMTFTAMNIFNINLATNINVAKFAFTVYAIASGMNLDQKLS
IKE*
BS28151.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or43b-PA | 403 | CG17853-PA | 1..403 | 1..403 | 2113 | 100 | Plus |
| Or42a-PA | 406 | CG17250-PA | 7..403 | 5..403 | 753 | 36.8 | Plus |
| Or42b-PA | 399 | CG12754-PA | 3..395 | 5..398 | 699 | 36.5 | Plus |
| Or59b-PA | 398 | CG3569-PA | 4..396 | 5..398 | 679 | 34.5 | Plus |
| Or22b-PA | 397 | CG4231-PA | 6..395 | 5..398 | 632 | 34.3 | Plus |
