BS28154.complete Sequence
2489 bp assembled on 2012-04-11
GenBank Submission: KX804761
> BS28154.complete
GAAGTTATCAGTCGACATGTCCGTGAGTCGAGTGACTATGATGCGAAAGG
GCCACTCCGGGGAGGTAGCACGCAAGCCCAACACTGTGGTGGTGTCGGTT
CCACCGCTGGTGAAGAAGTCCAGCAAGAGCCGCTCGTTCCACTTCCGCTA
TCTGGAGCTGTGCCGGGCCAAGAATCTGACGCCGGTGCCGGAAATCCGCA
GCAAGTCGAATGCGACCACCACCTTTCTGGAGCTGTGCGGCGATAAGCTG
GCGGTCAGCGATTGGCAGCTCCTAACCGAGGCGCTCCACTATGATCTCGT
GCTCCAGCAGCTGGTGGTGCGCCTGCGACGCACATATCCACAAACCAACA
TTGATCCCATTGACACCGAGAAACGAGCCCGACTTTTTCGCCAGCGGCCA
GTGATCTATACTCGCTTCATATTCAACAGTTTGGTCCAGGCGATTGCCAA
CTGTGTTTCGAGCAACAAAAATCTAAGTGTGTTGAAGCTGGAGGGATTGC
CATTGCAGGATGGATATATCGAGACCATTGCCAAGGCACTGGCAGACAAC
GAATGCCTCGAATCAGTGAGTTTTCGCAAATCCAACATTGGCGATAAGGG
CTGCGAGGTGGTGTGCAACACAGCCAAATACCTGAATCGCATCGAAGTGT
TCGACCTCTCTGAATGCGGACTTACTTCCAAGGGAGCCGAGCACGTGGCC
GACATGCTCAAGATGCAAAAGATCACCCGTTTCACGGAGGGATGGGAGAA
GTCCCTCCGCTACCGTAGCGTCGATGTGAACACGATTGGCGGTCTGCGCA
CGGTTTTGTTGGCTGACAACCCGGAGATTGGCGACGTGGGCATCCGGTGG
ATAACCGAGGTGTTGAAAGAGGATGCTTGGATAAAAAAAATCGACATGGA
GGGCTGCGGCCTGACGGATATCGGGGCAAATCTAATTCTCGATTGCCTGG
AGCTGAACACGGCCATTACGGAGTTCAATGTGCGAAACAACGAAGGAATC
AGTAAGTTCCTGCAGCGAAGTATCCATGATCGTCTTGGCTGTTTACCAGA
GGAGAAACAGGAGCCAGAGTATGATCTCAGTTGCGTCAACGGGCTACAGA
GCCTGCCCAAGAACAAGAAGGTCACCGTCTCTCAACTGCTGTCCCACACC
AAAGCATTGGAGGAGCAGCTCTCCTTCGAGCGAACGTTGCGCAAGAAGGC
CGAGAAGCTGAATGAGAAGCTTAGCCACCAGCTCATGAGACCCGACTCCA
ATCACATGGTTCAAGAGAAGGCCATGGAGGGAGGATCACAAACGAACATT
TCGAGGGAATATGTGGCGCGGAATGATGTTATGCCAGAAGTCATCAAAAA
TTCCCAAAGCTACCGCCAGTCGCACTTCAACCGGCTGGTCAACAGTGCGG
CCACCAGTCCCGAAGTCACACCCCGCAGCGAGATTGTCACATTGCGCAAG
GAGCAGCAGCTGCAACGTCAACAACCCCCACCAATGGAGGTCAAGCATCT
TTCCTTGGAGCAGCAAATCCGAAATCTGCGCGACGTGCAGAAAAAGGTGG
ACTTGGACGTGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAACAGCAGGCG
GAGGAAAGTCAATCCGAGTCGGAGCCGCAGAACGAGGAGCAACAGCATTA
CGAACAGCAAATGCAGGTCCAACGCAAACATCTCCAGGTGCGCAAGGTTC
GCAGTGAGATTAAGTATGTGGAAAACAATCCCAAGGAGGCAGCCAAAAAG
AATCGCGAGTCCAAGTCGGACCATGAGTTTGCCAACGAGAGAGATTTCAA
GCTTAATCCCTCTGTTCAATTCGAGACGGACATTGGCGACAATGTGATGG
TCAATCCTGGCCACCGATACGAGGGCGGCGGGGGCGATACGGCCTATGTC
TACAACTATGAGCATGAGCAGCAGCAGCAGCCAGTCAAGCGGGGCTACGA
GCACGGCTATGTGGTGGGCGTGGGTGACGGATCCCACAGGAGGCAGAGGC
AATCTCAACTGGTCGAGGCTTTGGTGCAAAAACGTGTCCCAGGCGCCAGC
GATGGACATGTGGCGCAGTTCGTTAGCAATCTGGAACGACAAGCGAATGC
TGGTAAAACGGGGAAAAAGCGCCTTAAACCTCGGCCTGAGGACGATCTTC
AGGTACCAGTCGGCGACATGCACATGGAGTCGTCGTATATGTCCCGCTCC
GAAGAACTCTCCTCAACGGACGTTACGCTGGAGAACTCAGACTACGAGAC
GGAGGCGACGGACTCCACGTTACTTAGTAGCTCGAAATACTCCTCCATGC
ATGTCTTTGTGCGGCGCAAGCAATCGGAGTCCATGTCACTCACAGAAGAG
GCCGGCGACGGAGATGCCGGCGGTGGTGGAGGCTCTGGCGATTTCGGCGA
CCAAAATGTCATATCCCCGGCCAATGTCTACATGTCCCTGCAGCTCCAGA
AGCAGCGGGAGCAGAGCGCCTAGAAGCTTTCTAGACCAT
BS28154.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:34:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7886-RA | 2457 | CG7886-PA | 1..2457 | 17..2473 | 12285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:34:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7886-RA | 3436 | CG7886-RA | 646..3102 | 17..2473 | 12285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14627010..14627687 | 2473..1796 | 3390 | 100 | Minus |
| 3R | 32079331 | 3R | 14628269..14628731 | 1350..888 | 2315 | 100 | Minus |
| 3R | 32079331 | 3R | 14627766..14628210 | 1795..1351 | 2225 | 100 | Minus |
| 3R | 32079331 | 3R | 14629619..14629946 | 344..17 | 1640 | 100 | Minus |
| 3R | 32079331 | 3R | 14629350..14629541 | 536..345 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 14629106..14629284 | 712..534 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 14628781..14628957 | 887..711 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:34:04 has no hits.
BS28154.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:21 Download gff for
BS28154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7886-RA | 646..3102 | 17..2473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:54 Download gff for
BS28154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7886-RA | 646..3102 | 17..2473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:47 Download gff for
BS28154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7886-RA | 646..3102 | 17..2473 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:47 Download gff for
BS28154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14627010..14627687 | 1796..2473 | 100 | <- | Minus |
| 3R | 14627766..14628210 | 1351..1795 | 100 | <- | Minus |
| 3R | 14628269..14628731 | 888..1350 | 100 | <- | Minus |
| 3R | 14628781..14628955 | 713..887 | 100 | <- | Minus |
| 3R | 14629106..14629282 | 536..712 | 100 | <- | Minus |
| 3R | 14629351..14629541 | 345..535 | 100 | <- | Minus |
| 3R | 14629619..14629946 | 17..344 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:54 Download gff for
BS28154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10452732..10453409 | 1796..2473 | 100 | <- | Minus |
| arm_3R | 10453488..10453932 | 1351..1795 | 100 | <- | Minus |
| arm_3R | 10453991..10454453 | 888..1350 | 100 | <- | Minus |
| arm_3R | 10454503..10454677 | 713..887 | 100 | <- | Minus |
| arm_3R | 10454828..10455004 | 536..712 | 100 | <- | Minus |
| arm_3R | 10455073..10455263 | 345..535 | 100 | <- | Minus |
| arm_3R | 10455341..10455668 | 17..344 | 100 | | Minus |
BS28154.pep Sequence
Translation from 16 to 2472
> BS28154.pep
MSVSRVTMMRKGHSGEVARKPNTVVVSVPPLVKKSSKSRSFHFRYLELCR
AKNLTPVPEIRSKSNATTTFLELCGDKLAVSDWQLLTEALHYDLVLQQLV
VRLRRTYPQTNIDPIDTEKRARLFRQRPVIYTRFIFNSLVQAIANCVSSN
KNLSVLKLEGLPLQDGYIETIAKALADNECLESVSFRKSNIGDKGCEVVC
NTAKYLNRIEVFDLSECGLTSKGAEHVADMLKMQKITRFTEGWEKSLRYR
SVDVNTIGGLRTVLLADNPEIGDVGIRWITEVLKEDAWIKKIDMEGCGLT
DIGANLILDCLELNTAITEFNVRNNEGISKFLQRSIHDRLGCLPEEKQEP
EYDLSCVNGLQSLPKNKKVTVSQLLSHTKALEEQLSFERTLRKKAEKLNE
KLSHQLMRPDSNHMVQEKAMEGGSQTNISREYVARNDVMPEVIKNSQSYR
QSHFNRLVNSAATSPEVTPRSEIVTLRKEQQLQRQQPPPMEVKHLSLEQQ
IRNLRDVQKKVDLDVEEEEEEEEEEQQAEESQSESEPQNEEQQHYEQQMQ
VQRKHLQVRKVRSEIKYVENNPKEAAKKNRESKSDHEFANERDFKLNPSV
QFETDIGDNVMVNPGHRYEGGGGDTAYVYNYEHEQQQQPVKRGYEHGYVV
GVGDGSHRRQRQSQLVEALVQKRVPGASDGHVAQFVSNLERQANAGKTGK
KRLKPRPEDDLQVPVGDMHMESSYMSRSEELSSTDVTLENSDYETEATDS
TLLSSSKYSSMHVFVRRKQSESMSLTEEAGDGDAGGGGGSGDFGDQNVIS
PANVYMSLQLQKQREQSA*
BS28154.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7886-PA | 818 | CG7886-PA | 1..818 | 1..818 | 4195 | 100 | Plus |
