BS28155.complete Sequence
1877 bp assembled on 2012-04-11
GenBank Submission: KX800627
> BS28155.complete
GAAGTTATCAGTCGACATGTCCAACCTTAAGCGTTTCGATGATGAGGAGC
GTGAGTCCAAATATGGACGTGTCTTCGCTGTCTCCGGTCCTGTCGTCACC
GCCGAGGCCATGTCTGGATCAGCTATGTACGAGTTGGTCCGCGTCGGCTA
CTACGAGCTGGTGGGCGAGATCATCCGTCTGGAGGGTGACATGGCCACCA
TCCAGGTGTACGAGGAGACCTCTGGCGTAACTGTCGGAGATCCGGTGCTG
CGTACCGGCAAGCCTCTTTCCGTGGAGCTGGGACCCGGTATCATGGGCAG
CATCTTTGACGGTATCCAGCGTCCCCTGAAGGACATTAACGAGCTGACCG
AATCCATCTACATCCCCAAGGGTGTGAACGTGCCCAGTTTGTCCCGCGTG
GCCAGCTGGGAGTTCAACCCCCTGAACGTCAAGGTCGGCTCCCACATCAC
CGGAGGTGACCTGTACGGTCTGGTGCATGAGAACACTCTGGTCAAGCACA
AGATGATTGTGAACCCCCGCGCCAAGGGAACAGTGCGCTACATCGCCCCC
TCCGGCAACTACAAGGTCGACGATGTCGTCCTGGAGACCGAGTTCGATGG
AGAGATCACCAAGCACACCATGTTGCAGGTGTGGCCAGTGCGTCAGCCAC
GTCCCGTGACCGAGAAGCTGCCCGCCAACCACCCCCTGCTCACCGGACAG
CGTGTGCTCGACTCGCTCTTCCCCTGTGTCCAGGGCGGTACCACCGCCAT
TCCCGGAGCTTTCGGTTGCGGCAAGACTGTGATCTCGCAGGCTCTGTCCA
AGTACTCCAACTCCGATGTCATCATCTACGTCGGTTGCGGTGAGCGTGGT
AACGAGATGTCTGAGGTACTGCGTGACTTCCCCGAGCTGTCCGTGGAGAT
CGACGGTGTCACCGAGTCCATCATGAAGCGTACCGCCCTTGTGGCCAACA
CCTCCAACATGCCTGTGGCTGCTCGTGAGGCCTCCATCTACACTGGTATC
ACCTTGTCCGAATACTTCCGTGATATGGGTTACAACGTGTCCATGATGGC
TGATTCCACCTCCCGTTGGGCTGAGGCTCTTCGTGAAATTTCTGGTCGTC
TCGCTGAGATGCCTGCCGATTCCGGCTACCCAGCCTACTTGGGAGCCCGT
CTGGCCTCCTTCTACGAGCGTGCCGGTCGCGTTAAGTGCTTGGGTAACCC
CGAGCGCGAGGGATCCGTGTCCATTGTCGGAGCTGTGTCTCCTCCTGGTG
GTGACTTCTCCGATCCCGTGACCTCCGCCACTCTGGGTATCGTGCAGGTG
TTCTGGGGTCTCGACAAGAAGTTGGCCCAGCGCAAGCACTTCCCCTCGAT
CAACTGGCTCATCTCCTACTCGAAGTACATGCGTGCTCTGGATGACTTCT
ATGACAAGAACTTCCCCGAATTCGTGCCGCTGCGTACCAAGGTCAAGGAG
ATCCTGCAGGAGGAGGAGGATCTGTCTGAGATCGTGCAACTGGTCGGCAA
GGCCTCTCTGGCCGAAACCGACAAGATCACGCTGGAGGTGGCCAAGCTGC
TGAAGGACGATTTCCTGCAGCAGAACTCCTACTCCTCGTACGATCGCTTC
TGCCCCTTCTACAAGACCGTGGGCATGTTGAGGAACATCATCGACTTCTA
CGACATGGCCCGTCACTCCGTGGAGTCTACGGCTCAGTCTGAGAACAAGA
TCACCTGGAACGTGATTCGTGAGGCAATGGGCAACATTATGTACCAGCTG
TCATCCATGAAGTTCAAGGACCCCGTTAAGGATGGTGAGGCCAAGATCAA
GGCTGACTTCGAGCAGCTGCACGAGGACCTGCAGCAGGCCTTCAGAAATC
TGGAGGACTAGAAGCTTTCTAGACCAT
BS28155.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha68-2-RF | 1845 | CG3762-PF | 1..1845 | 17..1861 | 9225 | 100 | Plus |
Vha68-2-RE | 1845 | CG3762-PE | 1..1845 | 17..1861 | 9225 | 100 | Plus |
Vha68-2-RD | 1845 | CG3762-PD | 1..1845 | 17..1861 | 9225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha68-2-RF | 2528 | CG3762-RF | 146..1991 | 17..1862 | 9230 | 100 | Plus |
Vha68-2-RE | 2474 | CG3762-RE | 92..1937 | 17..1862 | 9230 | 100 | Plus |
Vha68-2-RD | 2444 | CG3762-RD | 62..1907 | 17..1862 | 9230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12976928..12977910 | 787..1769 | 4915 | 100 | Plus |
2L | 23513712 | 2L | 12976121..12976824 | 88..791 | 3505 | 99.9 | Plus |
2L | 23513712 | 2L | 13001559..13002539 | 1769..789 | 3315 | 89.2 | Minus |
2L | 23513712 | 2L | 13002621..13003318 | 792..95 | 1765 | 83.5 | Minus |
2L | 23513712 | 2L | 12980110..12980959 | 789..1638 | 1625 | 79.4 | Plus |
2L | 23513712 | 2L | 12977975..12978070 | 1767..1862 | 480 | 100 | Plus |
2L | 23513712 | 2L | 12979335..12979627 | 80..372 | 445 | 76.8 | Plus |
2L | 23513712 | 2L | 12975637..12975712 | 17..92 | 380 | 100 | Plus |
2L | 23513712 | 2L | 12979803..12980049 | 545..791 | 290 | 74.5 | Plus |
2L | 23513712 | 2L | 13001413..13001507 | 1860..1766 | 265 | 85.3 | Minus |
Blast to na_te.dros performed 2014-11-28 04:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 3524..3551 | 1532..1559 | 113 | 89.3 | Plus |
BS28155.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:21 Download gff for
BS28155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha68-2-RC | 149..1993 | 17..1861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:57 Download gff for
BS28155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha68-2-RD | 62..1906 | 17..1861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:50 Download gff for
BS28155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha68-2-RD | 62..1906 | 17..1861 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:50 Download gff for
BS28155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12975637..12975712 | 17..92 | 100 | -> | Plus |
2L | 12976126..12976823 | 93..790 | 100 | -> | Plus |
2L | 12976932..12977909 | 791..1768 | 100 | -> | Plus |
2L | 12977977..12978069 | 1769..1861 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:57 Download gff for
BS28155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12975637..12975712 | 17..92 | 100 | -> | Plus |
arm_2L | 12976126..12976823 | 93..790 | 100 | -> | Plus |
arm_2L | 12976932..12977909 | 791..1768 | 100 | -> | Plus |
arm_2L | 12977977..12978069 | 1769..1861 | 100 | | Plus |
BS28155.pep Sequence
Translation from 16 to 1860
> BS28155.pep
MSNLKRFDDEERESKYGRVFAVSGPVVTAEAMSGSAMYELVRVGYYELVG
EIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGIMGSIFDGI
QRPLKDINELTESIYIPKGVNVPSLSRVASWEFNPLNVKVGSHITGGDLY
GLVHENTLVKHKMIVNPRAKGTVRYIAPSGNYKVDDVVLETEFDGEITKH
TMLQVWPVRQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFG
CGKTVISQALSKYSNSDVIIYVGCGERGNEMSEVLRDFPELSVEIDGVTE
SIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSR
WAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREGS
VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLIS
YSKYMRALDDFYDKNFPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAE
TDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLRNIIDFYDMARH
SVESTAQSENKITWNVIREAMGNIMYQLSSMKFKDPVKDGEAKIKADFEQ
LHEDLQQAFRNLED*
BS28155.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha68-2-PF | 614 | CG3762-PF | 1..614 | 1..614 | 3162 | 100 | Plus |
Vha68-2-PE | 614 | CG3762-PE | 1..614 | 1..614 | 3162 | 100 | Plus |
Vha68-2-PD | 614 | CG3762-PD | 1..614 | 1..614 | 3162 | 100 | Plus |
Vha68-2-PC | 614 | CG3762-PC | 1..614 | 1..614 | 3162 | 100 | Plus |
Vha68-2-PB | 614 | CG3762-PB | 1..614 | 1..614 | 3162 | 100 | Plus |