Clone BS28155 Report

Search the DGRC for BS28155

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptVha68-2-RB
Protein status:BS28155.pep: full length peptide match
Sequenced Size:1877

Clone Sequence Records

BS28155.complete Sequence

1877 bp assembled on 2012-04-11

GenBank Submission: KX800627

> BS28155.complete
GAAGTTATCAGTCGACATGTCCAACCTTAAGCGTTTCGATGATGAGGAGC
GTGAGTCCAAATATGGACGTGTCTTCGCTGTCTCCGGTCCTGTCGTCACC
GCCGAGGCCATGTCTGGATCAGCTATGTACGAGTTGGTCCGCGTCGGCTA
CTACGAGCTGGTGGGCGAGATCATCCGTCTGGAGGGTGACATGGCCACCA
TCCAGGTGTACGAGGAGACCTCTGGCGTAACTGTCGGAGATCCGGTGCTG
CGTACCGGCAAGCCTCTTTCCGTGGAGCTGGGACCCGGTATCATGGGCAG
CATCTTTGACGGTATCCAGCGTCCCCTGAAGGACATTAACGAGCTGACCG
AATCCATCTACATCCCCAAGGGTGTGAACGTGCCCAGTTTGTCCCGCGTG
GCCAGCTGGGAGTTCAACCCCCTGAACGTCAAGGTCGGCTCCCACATCAC
CGGAGGTGACCTGTACGGTCTGGTGCATGAGAACACTCTGGTCAAGCACA
AGATGATTGTGAACCCCCGCGCCAAGGGAACAGTGCGCTACATCGCCCCC
TCCGGCAACTACAAGGTCGACGATGTCGTCCTGGAGACCGAGTTCGATGG
AGAGATCACCAAGCACACCATGTTGCAGGTGTGGCCAGTGCGTCAGCCAC
GTCCCGTGACCGAGAAGCTGCCCGCCAACCACCCCCTGCTCACCGGACAG
CGTGTGCTCGACTCGCTCTTCCCCTGTGTCCAGGGCGGTACCACCGCCAT
TCCCGGAGCTTTCGGTTGCGGCAAGACTGTGATCTCGCAGGCTCTGTCCA
AGTACTCCAACTCCGATGTCATCATCTACGTCGGTTGCGGTGAGCGTGGT
AACGAGATGTCTGAGGTACTGCGTGACTTCCCCGAGCTGTCCGTGGAGAT
CGACGGTGTCACCGAGTCCATCATGAAGCGTACCGCCCTTGTGGCCAACA
CCTCCAACATGCCTGTGGCTGCTCGTGAGGCCTCCATCTACACTGGTATC
ACCTTGTCCGAATACTTCCGTGATATGGGTTACAACGTGTCCATGATGGC
TGATTCCACCTCCCGTTGGGCTGAGGCTCTTCGTGAAATTTCTGGTCGTC
TCGCTGAGATGCCTGCCGATTCCGGCTACCCAGCCTACTTGGGAGCCCGT
CTGGCCTCCTTCTACGAGCGTGCCGGTCGCGTTAAGTGCTTGGGTAACCC
CGAGCGCGAGGGATCCGTGTCCATTGTCGGAGCTGTGTCTCCTCCTGGTG
GTGACTTCTCCGATCCCGTGACCTCCGCCACTCTGGGTATCGTGCAGGTG
TTCTGGGGTCTCGACAAGAAGTTGGCCCAGCGCAAGCACTTCCCCTCGAT
CAACTGGCTCATCTCCTACTCGAAGTACATGCGTGCTCTGGATGACTTCT
ATGACAAGAACTTCCCCGAATTCGTGCCGCTGCGTACCAAGGTCAAGGAG
ATCCTGCAGGAGGAGGAGGATCTGTCTGAGATCGTGCAACTGGTCGGCAA
GGCCTCTCTGGCCGAAACCGACAAGATCACGCTGGAGGTGGCCAAGCTGC
TGAAGGACGATTTCCTGCAGCAGAACTCCTACTCCTCGTACGATCGCTTC
TGCCCCTTCTACAAGACCGTGGGCATGTTGAGGAACATCATCGACTTCTA
CGACATGGCCCGTCACTCCGTGGAGTCTACGGCTCAGTCTGAGAACAAGA
TCACCTGGAACGTGATTCGTGAGGCAATGGGCAACATTATGTACCAGCTG
TCATCCATGAAGTTCAAGGACCCCGTTAAGGATGGTGAGGCCAAGATCAA
GGCTGACTTCGAGCAGCTGCACGAGGACCTGCAGCAGGCCTTCAGAAATC
TGGAGGACTAGAAGCTTTCTAGACCAT

BS28155.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Vha68-2-RF 1845 CG3762-PF 1..1845 17..1861 9225 100 Plus
Vha68-2-RE 1845 CG3762-PE 1..1845 17..1861 9225 100 Plus
Vha68-2-RD 1845 CG3762-PD 1..1845 17..1861 9225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Vha68-2-RF 2528 CG3762-RF 146..1991 17..1862 9230 100 Plus
Vha68-2-RE 2474 CG3762-RE 92..1937 17..1862 9230 100 Plus
Vha68-2-RD 2444 CG3762-RD 62..1907 17..1862 9230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12976928..12977910 787..1769 4915 100 Plus
2L 23513712 2L 12976121..12976824 88..791 3505 99.9 Plus
2L 23513712 2L 13001559..13002539 1769..789 3315 89.2 Minus
2L 23513712 2L 13002621..13003318 792..95 1765 83.5 Minus
2L 23513712 2L 12980110..12980959 789..1638 1625 79.4 Plus
2L 23513712 2L 12977975..12978070 1767..1862 480 100 Plus
2L 23513712 2L 12979335..12979627 80..372 445 76.8 Plus
2L 23513712 2L 12975637..12975712 17..92 380 100 Plus
2L 23513712 2L 12979803..12980049 545..791 290 74.5 Plus
2L 23513712 2L 13001413..13001507 1860..1766 265 85.3 Minus
Blast to na_te.dros performed 2014-11-28 04:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 3524..3551 1532..1559 113 89.3 Plus

BS28155.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:21 Download gff for BS28155.complete
Subject Subject Range Query Range Percent Splice Strand
Vha68-2-RC 149..1993 17..1861 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:57 Download gff for BS28155.complete
Subject Subject Range Query Range Percent Splice Strand
Vha68-2-RD 62..1906 17..1861 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:50 Download gff for BS28155.complete
Subject Subject Range Query Range Percent Splice Strand
Vha68-2-RD 62..1906 17..1861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:50 Download gff for BS28155.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12975637..12975712 17..92 100 -> Plus
2L 12976126..12976823 93..790 100 -> Plus
2L 12976932..12977909 791..1768 100 -> Plus
2L 12977977..12978069 1769..1861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:57 Download gff for BS28155.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12975637..12975712 17..92 100 -> Plus
arm_2L 12976126..12976823 93..790 100 -> Plus
arm_2L 12976932..12977909 791..1768 100 -> Plus
arm_2L 12977977..12978069 1769..1861 100   Plus

BS28155.pep Sequence

Translation from 16 to 1860

> BS28155.pep
MSNLKRFDDEERESKYGRVFAVSGPVVTAEAMSGSAMYELVRVGYYELVG
EIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGIMGSIFDGI
QRPLKDINELTESIYIPKGVNVPSLSRVASWEFNPLNVKVGSHITGGDLY
GLVHENTLVKHKMIVNPRAKGTVRYIAPSGNYKVDDVVLETEFDGEITKH
TMLQVWPVRQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFG
CGKTVISQALSKYSNSDVIIYVGCGERGNEMSEVLRDFPELSVEIDGVTE
SIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSR
WAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREGS
VSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLIS
YSKYMRALDDFYDKNFPEFVPLRTKVKEILQEEEDLSEIVQLVGKASLAE
TDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLRNIIDFYDMARH
SVESTAQSENKITWNVIREAMGNIMYQLSSMKFKDPVKDGEAKIKADFEQ
LHEDLQQAFRNLED*

BS28155.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
Vha68-2-PF 614 CG3762-PF 1..614 1..614 3162 100 Plus
Vha68-2-PE 614 CG3762-PE 1..614 1..614 3162 100 Plus
Vha68-2-PD 614 CG3762-PD 1..614 1..614 3162 100 Plus
Vha68-2-PC 614 CG3762-PC 1..614 1..614 3162 100 Plus
Vha68-2-PB 614 CG3762-PB 1..614 1..614 3162 100 Plus