Clone BS28156 Report

Search the DGRC for BS28156

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG11052-RA
Protein status:BS28156.pep: full length peptide match
Sequenced Size:482

Clone Sequence Records

BS28156.complete Sequence

482 bp assembled on 2012-03-05

GenBank Submission: KX805872

> BS28156.complete
GAAGTTATCAGTCGACATGACCTCCCAAGAAACGCAGACTGAGGGTGAAC
GTAGGAGGGTAACTCTTCCATCTTCGACACCAGATAAAGGTACACCATCC
AAAAAAGGCAGCGAGGAGCCCAACCGAATTTCGAACACAGAGTTCCAAAA
AAGAGTAACATCGGACAGAAGCGATGAGCCGGTCTTCAGCTGCCAATTCG
AAGTGTTCGGCATTGTGCAAGGCGTTTCATTTCGAATGTACACCTTGCGA
AGAGCTCAAAAGCTGGGAGTCCGGGGTTGGTGCAAAAACACCAACGAGAA
TACGGTGAAGGGCGAAATTCAAGCACACCGACATTCCTTTGAGTCCATGC
GCCTCTGGCTAAAGCACACCGGCAGCCCCACCAGTCGAATTGACAAATGC
ATTTTCAGTGAGACTACAGAACTTTCAGAATTCACGTTCACTAACTTCTC
CATAGTGGTGGATTAGAAGCTTTCTAGACCAT

BS28156.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11052-RD 450 CG11052-PD 1..450 17..466 2250 100 Plus
CG11052-RC 450 CG11052-PC 1..450 17..466 2250 100 Plus
CG11052-RB 450 CG11052-PB 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11052-RD 605 CG11052-RD 22..471 17..466 2250 100 Plus
CG11052-RC 761 CG11052-RC 178..627 17..466 2250 100 Plus
CG11052-RB 695 CG11052-RB 112..561 17..466 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8008846..8009051 222..17 1030 100 Minus
3R 32079331 3R 8008383..8008500 466..349 590 100 Minus
3R 32079331 3R 8008551..8008662 349..238 560 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:58:05 has no hits.

BS28156.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:37 Download gff for BS28156.complete
Subject Subject Range Query Range Percent Splice Strand
CG11052-RA 1..450 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:31 Download gff for BS28156.complete
Subject Subject Range Query Range Percent Splice Strand
CG11052-RB 112..561 17..466 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:01:26 Download gff for BS28156.complete
Subject Subject Range Query Range Percent Splice Strand
CG11052-RB 112..561 17..466 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:01:26 Download gff for BS28156.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8008847..8009051 17..221 100   Minus
3R 8008776..8008792 222..238 100 <- Minus
3R 8008383..8008500 349..466 100 <- Minus
3R 8008552..8008661 239..348 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:31 Download gff for BS28156.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3834105..3834222 349..466 100 <- Minus
arm_3R 3834274..3834383 239..348 100 <- Minus
arm_3R 3834498..3834514 222..238 100 <- Minus
arm_3R 3834569..3834773 17..221 100   Minus

BS28156.pep Sequence

Translation from 16 to 465

> BS28156.pep
MTSQETQTEGERRRVTLPSSTPDKGTPSKKGSEEPNRISNTEFQKRVTSD
RSDEPVFSCQFEVFGIVQGVSFRMYTLRRAQKLGVRGWCKNTNENTVKGE
IQAHRHSFESMRLWLKHTGSPTSRIDKCIFSETTELSEFTFTNFSIVVD*

BS28156.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11052-PD 149 CG11052-PD 1..149 1..149 781 100 Plus
CG11052-PC 149 CG11052-PC 1..149 1..149 781 100 Plus
CG11052-PB 149 CG11052-PB 1..149 1..149 781 100 Plus
CG11052-PA 149 CG11052-PA 1..149 1..149 781 100 Plus
CG34161-PC 125 CG34161-PC 6..123 29..146 243 39.8 Plus