Clone BS28157 Report

Search the DGRC for BS28157

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG33259-RA
Protein status:BS28157.pep: gold
Sequenced Size:392

Clone Sequence Records

BS28157.complete Sequence

392 bp assembled on 2012-03-05

GenBank Submission: KX806250

> BS28157.complete
GAAGTTATCAGTCGACATGTGGAAGTGGGAAACATTCACTCTTGTGGTAC
TGTGTAGTTTTTCGGCGGTAAAGTGCTTTGCTGAGAAAGTCGATTGTTCA
GTAAATGGAACTCAAACGGATTGCCCCACAGCTTGTCCAGAAACGTGTGA
TACCAAAGGAAAGCCCAATTGTACTTTGATATGCGGAGGTCCTTGTGTCT
GCAAGCCAGGATATGTTGTCAATAGAATGATTCCTGCCTGTGTACTGCGA
TCTGATTGTCCAAAAATCGTATTACAAAGCGACAGAGCCCGAAGACTGAC
GAATTTCAATTGCTTTAGTGGGGAAAATACTTGCACTCAACTAAAACATA
GTAGTAGTAAGCGAAATAATGACTAAAAGCTTTCTAGACCAT

BS28157.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG33259-RA 360 CG33259-PA 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG33259-RA 436 CG33259-RA 18..377 17..376 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15407849..15408208 17..376 1800 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:58:40 has no hits.

BS28157.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:38 Download gff for BS28157.complete
Subject Subject Range Query Range Percent Splice Strand
CG33259-RA 1..358 17..374 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:36 Download gff for BS28157.complete
Subject Subject Range Query Range Percent Splice Strand
CG33259-RA 18..375 17..374 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:01:36 Download gff for BS28157.complete
Subject Subject Range Query Range Percent Splice Strand
CG33259-RA 18..375 17..374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:01:36 Download gff for BS28157.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15407849..15408206 17..374 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:36 Download gff for BS28157.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15400949..15401306 17..374 100   Plus

BS28157.pep Sequence

Translation from 16 to 375

> BS28157.pep
MWKWETFTLVVLCSFSAVKCFAEKVDCSVNGTQTDCPTACPETCDTKGKP
NCTLICGGPCVCKPGYVVNRMIPACVLRSDCPKIVLQSDRARRLTNFNCF
SGENTCTQLKHSSSKRNND*

BS28157.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG33259-PA 119 CG33259-PA 1..119 1..119 673 100 Plus
Acp62F-PA 115 CG1262-PA 31..115 24..107 301 60 Plus
CG5267-PA 178 CG5267-PA 106..169 24..88 172 50.8 Plus
CG34189-PA 122 CG34189-PA 53..112 27..87 148 44.3 Plus