Clone BS28158 Report

Search the DGRC for BS28158

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG34021-RA
Protein status:BS28158.pep: gold
Sequenced Size:518

Clone Sequence Records

BS28158.complete Sequence

518 bp assembled on 2012-03-05

GenBank Submission: KX806202

> BS28158.complete
GAAGTTATCAGTCGACATGGATGTCACGAAAACATCAAGCGCTGAGGAAA
CCGAAAACACGGAAAATACTAGTCATGCTAAAAACATTAACGAAAACGTA
TCAAAATTTTATGAAACTATTGGAAATATTTCCCGAAATATGCGCAAGGA
CGATTGGACATATCTACAACGCCATCCAGAGATCCGAGCCATAATTCGGG
TCATTACAGCCGAGGCGGTTAAGGCAAAGCCATCGAATATCTACCAATTT
ACAGCCAATTTATTTGGAAGCGAAAGAGACGAGGAGATGGTAGAAAAGAT
AAACAAGCAACTTAAGTGGTTGGAAGAGCAGTTGCGAGGGGGTACGTGGA
ATCCTGACGAAGGATGTGCCCCGTTTCCAGAATCCAGCGAGACTTCTTCG
GAAACTAAATGCCAAACTAATTTTAATACCACTGCGAGTTTCAACATACC
CGAAAAGCAAGTTTGCCCTGAAAATTATAAGCCAGATTGCAAGAAATGTT
AAAAGCTTTCTAGACCAT

BS28158.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG34021-RA 486 CG34021-PA 1..486 17..502 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG34021-RA 760 CG34021-RA 98..585 17..504 2440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12336987..12337268 17..298 1410 100 Plus
2R 25286936 2R 12337336..12337543 297..504 1040 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:55:19 has no hits.

BS28158.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:34 Download gff for BS28158.complete
Subject Subject Range Query Range Percent Splice Strand
CG34021-RA 6..489 17..500 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:54 Download gff for BS28158.complete
Subject Subject Range Query Range Percent Splice Strand
CG34021-RA 98..581 17..500 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:00:23 Download gff for BS28158.complete
Subject Subject Range Query Range Percent Splice Strand
CG34021-RA 98..581 17..500 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:00:23 Download gff for BS28158.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12336987..12337268 17..298 100 -> Plus
2R 12337338..12337539 299..500 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:54 Download gff for BS28158.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8224492..8224773 17..298 100 -> Plus
arm_2R 8224843..8225044 299..500 100   Plus

BS28158.pep Sequence

Translation from 16 to 501

> BS28158.pep
MDVTKTSSAEETENTENTSHAKNINENVSKFYETIGNISRNMRKDDWTYL
QRHPEIRAIIRVITAEAVKAKPSNIYQFTANLFGSERDEEMVEKINKQLK
WLEEQLRGGTWNPDEGCAPFPESSETSSETKCQTNFNTTASFNIPEKQVC
PENYKPDCKKC*

BS28158.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG34021-PA 161 CG34021-PA 1..161 1..161 863 100 Plus
CG34012-PA 158 CG34012-PA 24..124 30..128 199 42.6 Plus