Clone BS28162 Report

Search the DGRC for BS28162

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG32832-RA
Protein status:BS28162.pep: full length peptide match
Sequenced Size:453

Clone Sequence Records

BS28162.complete Sequence

453 bp assembled on 2012-03-05

GenBank Submission: KX803632

> BS28162.complete
GAAGTTATCAGTCGACATGTCTAAAGGCACGGGACCCTTGTCTAAGTTGT
ACAATATTACCATCAGTACTATTGATAAATTTGTTCCAGGCGCAGTTCAG
CCACTTTGGCAATCCCCAGCTGGACCCCGTACTGTGTTTTTTTGGGCACC
AGCGTTTAAATGGTCCTTGGTGCTGGCTGGGCTGAGCGATACGCTAAGTC
GTCCTCCTGCCAATATATCGCTGAATCAATGCGGCTCCTTGGCAGTCACG
GGCTTAATTTGGTCTCGCTACTCAGTGGTTATCACACCCAAGAACTACAA
TCTTCTGGCCGTCAACATAGCCGTCTTTCTCATCCAGGGTTATCTAATGG
TCAAGCACCTAAGGTGGCGCAGCGAGAACTCTCGGAATGCGGTGTTCAAT
CATTCGCACTACCCAATCAAATCAGGAGATGATTGGTGAGCTTTCTAGAC
CAT

BS28162.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32832-RB 423 CG32832-PB 1..421 17..437 2105 100 Plus
CG32832-RA 423 CG32832-PA 1..421 17..437 2105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32832-RB 772 CG32832-RB 75..495 17..437 2105 100 Plus
CG32832-RA 675 CG32832-RA 75..495 17..437 2105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16878603..16878877 437..163 1375 100 Minus
2L 23513712 2L 16879110..16879216 123..17 535 100 Minus
2L 23513712 2L 16879017..16879058 163..122 210 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:59:33 has no hits.

BS28162.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:39 Download gff for BS28162.complete
Subject Subject Range Query Range Percent Splice Strand
CG32832-RA 60..480 17..437 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:47 Download gff for BS28162.complete
Subject Subject Range Query Range Percent Splice Strand
CG32832-RA 75..495 17..437 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:01:53 Download gff for BS28162.complete
Subject Subject Range Query Range Percent Splice Strand
CG32832-RA 75..495 17..437 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:01:53 Download gff for BS28162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16878603..16878876 164..437 100 <- Minus
2L 16879017..16879057 123..163 100 <- Minus
2L 16879111..16879216 17..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:47 Download gff for BS28162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16878603..16878876 164..437 100 <- Minus
arm_2L 16879017..16879057 123..163 100 <- Minus
arm_2L 16879111..16879216 17..122 100   Minus

BS28162.pep Sequence

Translation from 16 to 438

> BS28162.pep
MSKGTGPLSKLYNITISTIDKFVPGAVQPLWQSPAGPRTVFFWAPAFKWS
LVLAGLSDTLSRPPANISLNQCGSLAVTGLIWSRYSVVITPKNYNLLAVN
IAVFLIQGYLMVKHLRWRSENSRNAVFNHSHYPIKSGDDW*

BS28162.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG32832-PB 140 CG32832-PB 1..140 1..140 747 100 Plus
CG32832-PA 140 CG32832-PA 1..140 1..140 747 100 Plus
CG9399-PD 154 CG9399-PD 22..126 2..107 338 61.3 Plus
CG9399-PA 154 CG9399-PA 22..126 2..107 338 61.3 Plus
CG9399-PB 154 CG9399-PB 22..126 2..107 338 61.3 Plus