Clone BS28165 Report

Search the DGRC for BS28165

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptSfp84E-RA
Protein status:BS28165.pep: gold
Sequenced Size:515

Clone Sequence Records

BS28165.complete Sequence

515 bp assembled on 2012-03-05

GenBank Submission: KX806013

> BS28165.complete
GAAGTTATCAGTCGACATGCGTCACTTTACCGTGCTAGTATCCTGCATCC
TGATAGTTATATTGCCATGCGTGTTAGGGGCTCACAGGACAGCTCTCAAG
AGTCATTATAGAAGCTTTGTGAAACCAAAGCAGAATGTCATACGGGCTAG
AACCAATCAAACAACACAACTTACATTAGGAGACTATACGGAAAACTTTT
ATAAACACTGCATGGATATTTTCAAAGAGAAAAACTTGGTTGGTAAAGTG
ATCCATGGCATGATCAGTGGAATTTTAGACAGGCTCAATGAAGTGTGCCT
CGACAAGCCCATTCACCCACTTATCCACAAAGTTTTCACGGAAATCCTTC
TCTGTGGCGGAAGCATGTCGGATGCAATCGATAGCGTCATTGACATATTA
TTTGGAAATTTGGAAAGAAATTGCAGGGAGAGGCCTGGATTCAATAGCTA
TTATATTTTAACCAGTGCGGAAAACGAAATAGTTGAATCAAAAGGTTAAA
AGCTTTCTAGACCAT

BS28165.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp84E-RA 483 CG42484-PA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp84E-RA 685 CG42484-RA 30..513 17..500 2420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7979760..7980241 500..19 2410 100 Minus
Blast to na_te.dros performed 2014-11-28 05:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 3972..4068 73..169 125 58.8 Plus

BS28165.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:40 Download gff for BS28165.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp84E-RA 30..510 17..497 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:49 Download gff for BS28165.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp84E-RA 30..510 17..497 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:02:01 Download gff for BS28165.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp84E-RA 30..510 17..497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:02:01 Download gff for BS28165.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7979763..7980242 17..497 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:49 Download gff for BS28165.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3805485..3805964 17..497 99   Minus

BS28165.pep Sequence

Translation from 16 to 498

> BS28165.pep
MRHFTVLVSCILIVILPCVLGAHRTALKSHYRSFVKPKQNVIRARTNQTT
QLTLGDYTENFYKHCMDIFKEKNLVGKVIHGMISGILDRLNEVCLDKPIH
PLIHKVFTEILLCGGSMSDAIDSVIDILFGNLERNCRERPGFNSYYILTS
AENEIVESKG*

BS28165.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp84E-PA 160 CG42484-PA 1..160 1..160 838 100 Plus