BS28169.complete Sequence
2024 bp assembled on 2012-04-11
GenBank Submission: KX801795
> BS28169.complete
GAAGTTATCAGTCGACATGGACGACACACAGCACTTCTGCCTGCGCTGGA
ACAACTACCAGAGCAGCATAACCTCGGCGTTCGAGAATCTGCGCGACGAC
GAGGCCTTCGTGGATGTGACCCTCGCCTGCGAGGGACGCAGCATCAAGGC
ACACCGCGTCGTCCTCTCCGCCTGCAGTCCCTACTTCCGCGAGCTGCTCA
AGAGCACACCCTGCAAACACCCGGTCATACTGCTGCAGGATGTCAACTTC
ATGGACCTGCACGCCCTGGTGGAGTTCATCTACCACGGCGAGGTCAACGT
GCACCAGAAGTCCCTGCAGTCCTTCCTTAAGACCGCCGAAGTGCTGCGCG
TCTCTGGACTCACGCAGCAGCAGGCAGAGGACACACACAGCCATCTGGCT
CAGATACAGAACCTGGCCAATTCCGGCGGCCGCACGCCGCTCAACACGCA
CACCCAATCGCTCCCACATCCGCACCATGGCTCGCTACACGACGACGGCG
GCTCCTCGACCCTCTTCAGCCGCCAGGGAGCGGGTTCGCCACCGCCGACG
GCGGTGCCATCGCTGCCCTCGCACATCAACAACCAGCTGCTGAAGCGCAT
GGCCATGATGCACCGCAGCAGTGCCGCCGCCGCCGCCGAGGAGACCTCCC
ACGCCTTTAAGCGTCTGCGCGGCTCGGACAACAGCCTGCCGCTGTCCGGC
GCCGTTGGCAGTGGCAGCAACAACAACAGCCCCGACTTGCCGCCGCTTCA
TGCGCGCAGCGCCTCGCCCCAGCAGACTCCGGCCGACTTCAGTACGATCA
AGCACCACAACAACAACAACACGCCGCCGCTGAAGGAGGAGAAGCGCAAC
GGACCCACAGGCAACGGAAACTCTGGCAACGGCAATGGCAATGGCAACGG
AGCGAGCAACGGCAACGGAATCTCCATCAGCGACAAGCTGGGCAGCCTCA
CACCTTCGCCGCTGGCTCGAGCGGGCGCCGATGATGTCAAGTCGGAGCCC
ATGGACATGGTCTGCTCTAACAACAATGCCAATGCCAACGACGAACACAG
CAACGACTCCACCGGCGAGCACGATGCCAATCGCTCCAGTAGCGGCGACG
GCGGCAAGGGATCCCTGAGCTCCGGCAACGACGAGGAGATCGGCGACGGA
CTCGCCTCCCATCATGCCGCCCCTCAGTTCATCATGTCGCCGGCGGAGAA
CAAGATGTTCCATGCAGCCGCCTTCAACTTTCCCAATATCGATCCCTCAG
CGTTGCTAGGTCTCAACACACAGTTGCAGCAGTCCGGTGACCTCGCCGTG
TCCCCTCAAGCCATCACAAGTGCCTCCGGCATCTGTGGCCTTAACCTCTC
CACATTTGCAGCCAACGGGAGCAGCAGCGGCGGGAGCAACGGTGGCCTGT
CAATGACCGCCCTGCTGCCCCAGCAGCAGCAGCAGCAGCAACAGCAGCAC
CAGATGTCGCAACAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGGG
GAACAGCTCCAGCGGCCAACAACAACAGCCCAACGGGATCCTGGCCTGCA
GTACGCCCAAGGCCAATACGCCCACCACCACACAGCAGCAAATGTACGCG
GCGGTGATGGCCGCTGCCGCATCCGCGTCCGCCTCGACGAGCGGCAGCGC
CAACAGTTCGCTGAACAACTCGAACTCAACATTGAACACCTCGGGGGGAC
TGAACAATTCAGCGAGCGGCGGCGACGACTTCCGGTGCAATCCGTGCAAC
AAGAACCTGAGCTCGCTGACGCGCCTCAAGCGGCATATCCAAAACGTTCA
CATGCGCCCCACCAAGGAGCCCGTGTGCAATATCTGCAAGCGCGTCTACA
GCTCCTTGAATAGCCTGCGCAACCACAAGAGCATCTACCACCGCAACCTC
AAGCAGCCGAAGCAGGAGCCAGGCGTCGGCGCAACCCAGGCGGCGGCCAA
TAGCTTCTATCACCAGCAGCACCAGCAGCAGCAGCTCAATCACCACTCCT
CTTCATAGAAGCTTTCTAGACCAT
BS28169.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| br-RO | 1992 | CG11491-PO | 1..1992 | 17..2008 | 9960 | 100 | Plus |
| br-RG | 1992 | CG11491-PG | 1..1992 | 17..2008 | 9960 | 100 | Plus |
| br-RN | 2175 | CG11491-PN | 1..1294 | 17..1310 | 6470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| br-RO | 4368 | CG11491-RO | 975..2971 | 12..2008 | 9970 | 99.9 | Plus |
| br-RG | 4236 | CG11491-RG | 843..2839 | 12..2008 | 9970 | 99.9 | Plus |
| br-RN | 4546 | CG11491-RN | 970..2268 | 12..1310 | 6480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1643066..1643765 | 1309..2008 | 3500 | 100 | Plus |
| X | 23542271 | X | 1636096..1636550 | 392..846 | 2275 | 100 | Plus |
| X | 23542271 | X | 1636639..1636912 | 846..1119 | 1370 | 100 | Plus |
| X | 23542271 | X | 1635830..1636020 | 201..391 | 955 | 100 | Plus |
| X | 23542271 | X | 1624517..1624707 | 12..202 | 940 | 99.5 | Plus |
| X | 23542271 | X | 1636998..1637141 | 1118..1261 | 720 | 100 | Plus |
| X | 23542271 | X | 1637280..1637334 | 1256..1310 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:35:53 has no hits.
BS28169.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:24 Download gff for
BS28169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RN | 975..2268 | 17..1310 | 100 | -> | Plus |
| br-RN | 2452..3149 | 1311..2008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:04 Download gff for
BS28169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RG | 848..2839 | 17..2008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:32 Download gff for
BS28169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RG | 848..2839 | 17..2008 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:32 Download gff for
BS28169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1624522..1624707 | 17..202 | 100 | -> | Plus |
| X | 1635832..1636020 | 203..391 | 100 | -> | Plus |
| X | 1636096..1636549 | 392..845 | 100 | -> | Plus |
| X | 1636639..1636912 | 846..1119 | 100 | -> | Plus |
| X | 1637000..1637139 | 1120..1259 | 100 | -> | Plus |
| X | 1637284..1637334 | 1260..1310 | 100 | -> | Plus |
| X | 1643068..1643765 | 1311..2008 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:04 Download gff for
BS28169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1518555..1518740 | 17..202 | 100 | -> | Plus |
| arm_X | 1529865..1530053 | 203..391 | 100 | -> | Plus |
| arm_X | 1530129..1530582 | 392..845 | 100 | -> | Plus |
| arm_X | 1530672..1530945 | 846..1119 | 100 | -> | Plus |
| arm_X | 1531033..1531172 | 1120..1259 | 100 | -> | Plus |
| arm_X | 1531317..1531367 | 1260..1310 | 100 | -> | Plus |
| arm_X | 1537101..1537798 | 1311..2008 | 100 | | Plus |
BS28169.pep Sequence
Translation from 16 to 2007
> BS28169.pep
MDDTQHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVL
SACSPYFRELLKSTPCKHPVILLQDVNFMDLHALVEFIYHGEVNVHQKSL
QSFLKTAEVLRVSGLTQQQAEDTHSHLAQIQNLANSGGRTPLNTHTQSLP
HPHHGSLHDDGGSSTLFSRQGAGSPPPTAVPSLPSHINNQLLKRMAMMHR
SSAAAAAEETSHAFKRLRGSDNSLPLSGAVGSGSNNNSPDLPPLHARSAS
PQQTPADFSTIKHHNNNNTPPLKEEKRNGPTGNGNSGNGNGNGNGASNGN
GISISDKLGSLTPSPLARAGADDVKSEPMDMVCSNNNANANDEHSNDSTG
EHDANRSSSGDGGKGSLSSGNDEEIGDGLASHHAAPQFIMSPAENKMFHA
AAFNFPNIDPSALLGLNTQLQQSGDLAVSPQAITSASGICGLNLSTFAAN
GSSSGGSNGGLSMTALLPQQQQQQQQQHQMSQQQQQQQQQQQQQGNSSSG
QQQQPNGILACSTPKANTPTTTQQQMYAAVMAAAASASASTSGSANSSLN
NSNSTLNTSGGLNNSASGGDDFRCNPCNKNLSSLTRLKRHIQNVHMRPTK
EPVCNICKRVYSSLNSLRNHKSIYHRNLKQPKQEPGVGATQAAANSFYHQ
QHQQQQLNHHSSS*
BS28169.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| br-PO | 663 | CG11491-PO | 1..663 | 1..663 | 3469 | 100 | Plus |
| br-PG | 663 | CG11491-PG | 1..663 | 1..663 | 3469 | 100 | Plus |
| br-PN | 724 | CG11491-PN | 1..724 | 1..663 | 3133 | 85.9 | Plus |
| br-PA | 702 | CG11491-PA | 1..641 | 1..626 | 2353 | 73.2 | Plus |
| br-PQ | 880 | CG11491-PQ | 1..535 | 1..561 | 2325 | 81.8 | Plus |
