BS28175.complete Sequence
965 bp assembled on 2012-03-06
GenBank Submission: KX801549
> BS28175.complete
GAAGTTATCAGTCGACATGAAGCTCGCTCCGACTGTTAAGCTAAACAATG
GCTACGAGATGCCAATTCTGGGCCTAGGAACCTACAATTTAAAGAAGTCT
CGCTGTGAGGCTGCCGTGTGCCACGCCCTCGAAATGGGCTATCGGCATAT
AGACACCGCATATCTGTACAGGAATGAAGGCATTATAGGCAAGGTTTTAG
CTAAACTTATTGGCGACCAGAAACTGAAACGCGAACAGGTGTTTCTGGTC
ACAAAGCTGTGGGACATATACCACGAACCCAAGATGGTGAAATACGCCTG
TGATATGCAATTAAAGCTACTGGGCGTGGACTATATAGATCTATATCTGA
TGCATTCGCCGGTGGGCGTGGACTACATCTCTGATGAAGATCTGATGCCC
CACGAGAATGGCCAGCTGAGGACCAACGATGTGGACTATGTGGACACCTA
CAGAAGTATGGAGCAACTGGTGCATCTGGGGCTGGTGCGCAGCTTGGGAT
TGTCCAACTTTAATGCCAATCAGCTGAAGAGATTACTGGAAAACTGCCAA
ATCAAGCCGGCAAACCTACAAATAGAATGTCATCCGGAATTGGTGCAAGT
CCCATTAATTGAGCTCTGTAAATTTCACAATATCACCGTGGTTGCCTATT
CGCCACTGGGGCGTCCCAAAGCCTGCAATCCGCTGCCCGATTACTACACT
GATTCCAAGCTACTGGCGTTGGCAGCGAAATACGGCAAGACACCAGCTCA
AATCATCCTAAGATACTTGATCGATATTGGCACGGTACCTATTCCAAAAG
CTGCCCAGCGAGCCCATCTCGTAGAGAATCTGGATATATTTGATTTCCAC
CTAACGCCGGAGGAGTTGCTCCAAATGAAGACCTTTAATACAGGGCGCAG
AATCTGGAAATTCGATAAAGCGAAGAATCATCAGTACTATCCGTACTAGA
AGCTTTCTAGACCAT
BS28175.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10638-RB | 933 | CG10638-PB | 1..933 | 17..949 | 4665 | 100 | Plus |
| CG10638-RD | 954 | CG10638-PD | 1..73 | 17..89 | 365 | 100 | Plus |
| CG10638-RA | 954 | CG10638-PA | 1..73 | 17..89 | 365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10638-RB | 1180 | CG10638-RB | 76..1008 | 17..949 | 4665 | 100 | Plus |
| CG10638-RD | 1413 | CG10638-RD | 76..148 | 17..89 | 365 | 100 | Plus |
| CG10638-RA | 1115 | CG10638-RA | 76..148 | 17..89 | 365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12500212..12500554 | 769..427 | 1715 | 100 | Minus |
| 3L | 28110227 | 3L | 12499973..12500153 | 949..769 | 905 | 100 | Minus |
| 3L | 28110227 | 3L | 12500631..12500802 | 426..255 | 860 | 100 | Minus |
| 3L | 28110227 | 3L | 12500875..12501042 | 256..89 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 12501161..12501236 | 92..17 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:34:02 has no hits.
BS28175.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-06 14:55:28 Download gff for
BS28175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10638-RB | 76..1008 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:21 Download gff for
BS28175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10638-RB | 76..1008 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:53 Download gff for
BS28175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10638-RB | 76..1008 | 17..949 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:53 Download gff for
BS28175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12499973..12500152 | 770..949 | 100 | <- | Minus |
| 3L | 12500212..12500554 | 427..769 | 100 | <- | Minus |
| 3L | 12500631..12500800 | 257..426 | 100 | <- | Minus |
| 3L | 12500875..12501042 | 89..256 | 100 | <- | Minus |
| 3L | 12501165..12501236 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:21 Download gff for
BS28175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12493073..12493252 | 770..949 | 100 | <- | Minus |
| arm_3L | 12493312..12493654 | 427..769 | 100 | <- | Minus |
| arm_3L | 12493731..12493900 | 257..426 | 100 | <- | Minus |
| arm_3L | 12493975..12494142 | 89..256 | 100 | <- | Minus |
| arm_3L | 12494265..12494336 | 17..88 | 100 | | Minus |
BS28175.pep Sequence
Translation from 16 to 948
> BS28175.pep
MKLAPTVKLNNGYEMPILGLGTYNLKKSRCEAAVCHALEMGYRHIDTAYL
YRNEGIIGKVLAKLIGDQKLKREQVFLVTKLWDIYHEPKMVKYACDMQLK
LLGVDYIDLYLMHSPVGVDYISDEDLMPHENGQLRTNDVDYVDTYRSMEQ
LVHLGLVRSLGLSNFNANQLKRLLENCQIKPANLQIECHPELVQVPLIEL
CKFHNITVVAYSPLGRPKACNPLPDYYTDSKLLALAAKYGKTPAQIILRY
LIDIGTVPIPKAAQRAHLVENLDIFDFHLTPEELLQMKTFNTGRRIWKFD
KAKNHQYYPY*
BS28175.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10638-PB | 310 | CG10638-PB | 1..310 | 1..310 | 1646 | 100 | Plus |
| CG10638-PD | 317 | CG10638-PD | 1..313 | 1..310 | 900 | 53.7 | Plus |
| CG10638-PA | 317 | CG10638-PA | 1..313 | 1..310 | 900 | 53.7 | Plus |
| CG10863-PA | 316 | CG10863-PA | 6..312 | 5..310 | 791 | 48.2 | Plus |
| CG9436-PA | 311 | CG9436-PA | 4..307 | 3..310 | 774 | 46.8 | Plus |
