Clone BS28176 Report

Search the DGRC for BS28176

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:281
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG9125-RA
Protein status:BS28176.pep: full length peptide match
Sequenced Size:1160

Clone Sequence Records

BS28176.complete Sequence

1160 bp assembled on 2012-03-05

GenBank Submission: KX802456

> BS28176.complete
GAAGTTATCAGTCGACATGGCCGAGAACGCGGGCTTCATCAGTGTGCCCT
GGGGGCAGCACAAGCTGGGCGCGATGTACAATACGCCGTTTCCCTCGATA
AGCCGCCCGAAGTGCATCGGTGTGTGCAGCATAAACGCTAGCCGGGAATT
TGTGGACGACGCCAGCTGCGCCAGCTACTTGGCTGGCCAACCGTGGCCAC
CGCTGCCGTTCGATCTTAACGGGGGTATAGAGGATGTGATCCGTAAGCCC
GTCGAGAACGGCAAACGGGATCTGGAAATTATGCTGACCTACATTAAGCA
ACACCAGAAGGAGCTGCTCCGTCAGAGTAGCTCCGATGCGAGAAATCTAC
GCCTGGACAGCGACTTTGTAACACTGCGCGGTATTTTGCGGCAGATAATG
TGCCTGCAGTATGATAATCGCTCATTCCGCGTCAAGGCGACGCTCCTGAA
CGGCAACGTCTACATGTGCAAGGAGGAAACCCCAGAGCAGCAGCTGGAGA
ACGCGAACATGAGCAGGGCACAGCGGGTCATGTGCTCCTGGGGCTTCAAG
TTCGAGCAGTACCTGACCAGTGCCCAGGCGCAGGGAAAACCGGTGACCAA
TGTGCCGGTCAACGAGGCAGAGGAGTTCATGGGCGTGTACCGCACGAACC
TGGCCGGGATTTTGATGCTATACGGCGCCGAACTGGACTGTGTGGACAGC
AAGGAGCCAGTTGACTTCAAAGATTGCAGAGTGCTCGACTCATTGAAATT
CGTAGAGCTAAAGACCAGCGTCTTCAATATGAACCCTCACCAAATTCGCA
CCTTCAAATCGTTCAAGTCTGCCAACTGGTGGAGTCAGTCATTCCTGGTG
GGCATCACTACGCTCTACGTGGGACTCCGCGACACCAAGGGCATGCTGCA
GAGGATCGATGAGATCGATGTGGCAACACTGGCCCGCAACAAACCGTGGA
GTGCATCGGCAATGGCTTGGTACCTGGAACAGTTTCTGCGCAATCTTAAG
AAGCTGCTGGTGAACATTAACGATCCGTTTGCGGTGGTCCAGGTGACTTT
TTTAAATAAGCACGCCAGCTACGAAGTGCTGCGCGGTCCGGAACATCAAA
TCCTGCCCAACTGGTATCGAGATTTGCTCAAAACGCGCTCCTAAAAGCTT
TCTAGACCAT

BS28176.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9125-RA 1128 CG9125-PA 1..1128 17..1144 5640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9125-RA 1329 CG9125-RA 94..1221 17..1144 5640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16802557..16803251 711..17 3475 100 Minus
X 23542271 X 16802037..16802469 1144..712 2165 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:03:12 has no hits.

BS28176.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 16:16:42 Download gff for BS28176.complete
Subject Subject Range Query Range Percent Splice Strand
CG9125-RA 1..1126 17..1142 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:07 Download gff for BS28176.complete
Subject Subject Range Query Range Percent Splice Strand
CG9125-RA 94..1219 17..1142 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:03:09 Download gff for BS28176.complete
Subject Subject Range Query Range Percent Splice Strand
CG9125-RA 94..1219 17..1142 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:03:09 Download gff for BS28176.complete
Subject Subject Range Query Range Percent Splice Strand
X 16802039..16802469 712..1142 100 <- Minus
X 16802557..16803251 17..711 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:07 Download gff for BS28176.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16696072..16696502 712..1142 100 <- Minus
arm_X 16696590..16697284 17..711 100   Minus

BS28176.pep Sequence

Translation from 16 to 1143

> BS28176.pep
MAENAGFISVPWGQHKLGAMYNTPFPSISRPKCIGVCSINASREFVDDAS
CASYLAGQPWPPLPFDLNGGIEDVIRKPVENGKRDLEIMLTYIKQHQKEL
LRQSSSDARNLRLDSDFVTLRGILRQIMCLQYDNRSFRVKATLLNGNVYM
CKEETPEQQLENANMSRAQRVMCSWGFKFEQYLTSAQAQGKPVTNVPVNE
AEEFMGVYRTNLAGILMLYGAELDCVDSKEPVDFKDCRVLDSLKFVELKT
SVFNMNPHQIRTFKSFKSANWWSQSFLVGITTLYVGLRDTKGMLQRIDEI
DVATLARNKPWSASAMAWYLEQFLRNLKKLLVNINDPFAVVQVTFLNKHA
SYEVLRGPEHQILPNWYRDLLKTRS*

BS28176.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9125-PA 375 CG9125-PA 1..375 1..375 1977 100 Plus
cuff-PA 384 CG13190-PA 13..364 15..371 161 21.6 Plus