BS28178.complete Sequence
2090 bp assembled on 2012-04-11
GenBank Submission: KX806214
> BS28178.complete
GAAGTTATCAGTCGACATGAACAAATACTCGGCATTTATAGTCTGCATTT
CGCTCGTGCTTTTATTTACAAAAAAGGATGTGGGGAGCCATAATGTGGAC
TCAAGAATATATGGTTTCCAGCAATCATCAGGTATTTGCCATATTTACAA
TGGCACCATTTGTCGCGATGTCTTGAGCAATGCCCATGTTTTCGTATCCC
CCAATCTCACCATGAACGATTTGGAGGAGCGATTAAAGGCAGCTTATGGA
GTAATCAAGGAATCCAAGGATATGAACGCAAATTGCCGCATGTACGCTTT
GCCCAGCTTGTGTTTCAGTTCAATGCCAATTTGCCGGACTCCAGAGCGCA
CGAATCTCTTGTACTTCGCCAACGTGGCCACAAATGCCAAGCAACTGAAG
AACGTCAGCATTCGACGGAAGAGAACCAAGTCCAAGGACATTAAGAACAT
AAGCATATTCAAGAAGAAGTCCACCATCTACGAGGATGTGTTCAGCACAG
ACATATCGAGTAAATACCCACCAACCAGAGAGTCTGAGAACCTAAAACGC
ATTTGCCGCGAAGAGTGCGAACTTCTGGAGAACGAGCTGTGCCAGAAGGA
ATATGCCATTGCCAAGCGACATCCCGTCATCGGGATGGTGGGTGTGGAGG
ATTGCCAAAAGTTGCCGCAGCACAAGGACTGCCTATCCTTGGGCATCACC
ATCGAGGTGGATAAGACGGAGAATTGTTACTGGGAGGATGGATCGACATA
TAGAGGAGTGGCCAACGTCTCCGCATCCGGAAAGCCATGTTTGCGATGGT
CATGGCTGATGAAGGAAATCTCCGATTTCCCTGAACTCATCGGTCAGAAT
TATTGCAGAAATCCTGGAAGCGTTGAAAATAGTCCTTGGTGTTTTGTGGA
CTCCTCACGTGAACGCATAATCGAACTTTGTGATATTCCAAAATGTGCGG
ACAAAATATGGATTGCCATTGTCGGAACGACTGCAGCCATTATTCTAATA
TTCATAATTATATTTGCGATAATACTTTTCAAAAGGAGAACAATCATGCA
CTATGGAATGAGGAATATTCATAATATCAACACACCCAGCGCCGATAAAA
ATATCTACGGAAATTCGCAGCTTAATAACGCACAAGATGCTGGCAGGGGA
AATCTGGGAAATCTATCCGATCACGTTGCTTTGAACTCCAAACTTATCGA
AAGAAATACTCTGCTGAGGATAAACCATTTTACGCTGCAGGATGTTGAGT
TTCTGGAGGAGCTGGGCGAAGGAGCTTTTGGAAAAGTCTACAAGGGACAG
CTCCTGCAGCCGAACAAAACCACCATAACAGTTGCCATCAAGGCGTTGAA
GGAAAACGCCTCGGTGAAAACGCAGCAGGACTTTAAGCGCGAAATCGAAC
TAATCTCGGATCTAAAGCATCAGAATATAGTGTGCATATTGGGCGTAGTG
CTCAATAAGGAGCCCTACTGCATGCTGTTCGAGTACATGGCCAATGGTGA
TCTGCACGAATTCCTAATCTCAAACTCACCCACCGAAGGCAAGTCGCTGT
CGCAGTTGGAATTCCTGCAAATAGCTCTACAAATCAGCGAAGGAATGCAG
TATCTGTCGGCCCATCATTACGTACATCGCGACTTGGCAGCTCGGAATTG
CCTGGTAAACGAGGGTCTGGTTGTGAAGATATCCGATTTTGGACTATCCA
GAGACATTTACAGCTCAGATTATTATCGAGTTCAGTCAAAGTCGCTATTG
CCTGTAAGGTGGATGCCCTCGGAATCGATATTGTATGGAAAGTTTACGAC
CGAGAGCGATGTTTGGTCCTTTGGAGTCGTTCTTTGGGAAATATACAGCT
ATGGAATGCAGCCATACTACGGTTTTAGCAATCAGGAAGTAATCAATCTC
ATCCGTTCACGGCAACTGCTCTCCGCTCCGGAAAACTGTCCCACTGCTGT
CTACTCGCTAATGATCGAGTGCTGGCATGAGCAGTCAGTAAAACGTCCAA
CATTCACAGATATTTCGAACCGTCTCAAAACTTGGCACGAGGGCCACTTT
AAGGCCAGTAATCCAGAAATGTAAAAGCTTTCTAGACCAT
BS28178.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ror-RA | 2058 | CG4926-PA | 1..2058 | 17..2074 | 10290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ror-RA | 2271 | CG4926-RA | 125..2183 | 17..2075 | 10295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10252484..10253074 | 268..858 | 2955 | 100 | Plus |
| 2L | 23513712 | 2L | 10253667..10254115 | 1280..1728 | 2245 | 100 | Plus |
| 2L | 23513712 | 2L | 10253137..10253355 | 857..1075 | 1095 | 100 | Plus |
| 2L | 23513712 | 2L | 10254383..10254598 | 1860..2075 | 1080 | 100 | Plus |
| 2L | 23513712 | 2L | 10253407..10253612 | 1076..1281 | 1030 | 100 | Plus |
| 2L | 23513712 | 2L | 10252274..10252428 | 114..268 | 775 | 100 | Plus |
| 2L | 23513712 | 2L | 10254192..10254325 | 1728..1861 | 670 | 100 | Plus |
| 2L | 23513712 | 2L | 10251967..10252064 | 17..114 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:35:58 has no hits.
BS28178.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:25 Download gff for
BS28178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ror-RA | 130..2185 | 17..2072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:06 Download gff for
BS28178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ror-RA | 125..2180 | 17..2072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:33 Download gff for
BS28178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ror-RA | 125..2180 | 17..2072 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:33 Download gff for
BS28178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10251967..10252064 | 17..114 | 100 | -> | Plus |
| 2L | 10252275..10252427 | 115..267 | 100 | -> | Plus |
| 2L | 10252484..10253074 | 268..858 | 100 | -> | Plus |
| 2L | 10253139..10253355 | 859..1075 | 100 | -> | Plus |
| 2L | 10253407..10253611 | 1076..1280 | 100 | -> | Plus |
| 2L | 10253668..10254115 | 1281..1728 | 100 | -> | Plus |
| 2L | 10254193..10254325 | 1729..1861 | 100 | -> | Plus |
| 2L | 10254385..10254595 | 1862..2072 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:06 Download gff for
BS28178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10251967..10252064 | 17..114 | 100 | -> | Plus |
| arm_2L | 10252275..10252427 | 115..267 | 100 | -> | Plus |
| arm_2L | 10254193..10254325 | 1729..1861 | 100 | -> | Plus |
| arm_2L | 10254385..10254595 | 1862..2072 | 100 | | Plus |
| arm_2L | 10252484..10253074 | 268..858 | 100 | -> | Plus |
| arm_2L | 10253139..10253355 | 859..1075 | 100 | -> | Plus |
| arm_2L | 10253407..10253611 | 1076..1280 | 100 | -> | Plus |
| arm_2L | 10253668..10254115 | 1281..1728 | 100 | -> | Plus |
BS28178.pep Sequence
Translation from 16 to 2073
> BS28178.pep
MNKYSAFIVCISLVLLFTKKDVGSHNVDSRIYGFQQSSGICHIYNGTICR
DVLSNAHVFVSPNLTMNDLEERLKAAYGVIKESKDMNANCRMYALPSLCF
SSMPICRTPERTNLLYFANVATNAKQLKNVSIRRKRTKSKDIKNISIFKK
KSTIYEDVFSTDISSKYPPTRESENLKRICREECELLENELCQKEYAIAK
RHPVIGMVGVEDCQKLPQHKDCLSLGITIEVDKTENCYWEDGSTYRGVAN
VSASGKPCLRWSWLMKEISDFPELIGQNYCRNPGSVENSPWCFVDSSRER
IIELCDIPKCADKIWIAIVGTTAAIILIFIIIFAIILFKRRTIMHYGMRN
IHNINTPSADKNIYGNSQLNNAQDAGRGNLGNLSDHVALNSKLIERNTLL
RINHFTLQDVEFLEELGEGAFGKVYKGQLLQPNKTTITVAIKALKENASV
KTQQDFKREIELISDLKHQNIVCILGVVLNKEPYCMLFEYMANGDLHEFL
ISNSPTEGKSLSQLEFLQIALQISEGMQYLSAHHYVHRDLAARNCLVNEG
LVVKISDFGLSRDIYSSDYYRVQSKSLLPVRWMPSESILYGKFTTESDVW
SFGVVLWEIYSYGMQPYYGFSNQEVINLIRSRQLLSAPENCPTAVYSLMI
ECWHEQSVKRPTFTDISNRLKTWHEGHFKASNPEM*
BS28178.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:17:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ror-PA | 685 | CG4926-PA | 1..685 | 1..685 | 3607 | 100 | Plus |
| Nrk-PA | 724 | CG4007-PA | 146..709 | 179..668 | 812 | 34.7 | Plus |
| Alk-PB | 1701 | CG8250-PB | 1106..1460 | 316..670 | 587 | 34.8 | Plus |
| Alk-PA | 1701 | CG8250-PA | 1106..1460 | 316..670 | 587 | 34.8 | Plus |
| InR-PD | 2144 | CG18402-PD | 1374..1646 | 413..666 | 560 | 41.6 | Plus |
